Detail information of Os10g0485000_circ_g.2


General Information
CircRNA Name Os10g0485000_circ_g.2
ID in PlantcircBase osa_circ_007187
Alias NA
Organism Oryza sativa
Position chr10: 18322043-18324049  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0485000
Parent gene annotation FF domain containing protein. (Os10t0485000-01)
Parent gene strand -
Alternative splicing Os10g0485000_circ_g.1 Os10g0485000_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0485000-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAAAGAGCATCCCTTTCTTTTCGGTCCAAGGCTTCAAACCTTGGATCAGTGCCCCATTTTCT
TTTGAATTCCTTGTAATCCTTATTGGAGTTGATGTCctcatacaggtccttgacatggtcacga
aataacttttctgcatcacctttacctaaatcaggatttactgcacggccttgtggatcctttt
caagtctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATACAGGTCCTTGACATGGTCACGAAATAACTTTTCTGCATCACCTTTACCTAAATCAGGA
TTTACTGCACGGCCTTGTGGATCCTTTTCAAGTCTTGGTTTGGATTCTGTCCATGATGCCTATG
CAGAAAAAATAGCATAGTTAATATGAAGTTGTACAGTACATAGCAAAATAGCTTGTCAAATGGA
GTTCAACAAAGTGTCAAGTTACCTTGGGATCTTTTATGATTTCAACAAGTAAAGCTTGATATGA
AGACACGGCCTCTTTTCTTCGGATCTTCAATTTTACTCTCTCCATTTCCTGTTCTTCCCTTTCT
TTCCTTTTCCGCATCTCGCGCTCCCTCTCCTTTAACTTGGCCTGGGTTATTACATAGTATATGT
GAAGCTACAAAGCTACATTCAGTAAACAAAGCATCAGAGTACATCAGTTAAATTGACTGACTTG
TTCATCCAGTTTGGCCTTGGCAGCTTGCTCTGCTTCCTTTTCAGCGGATTTTAGTTCTGCTATG
TACTCATTAAAAGCAACCTCTCTTTCTTCGTGCTTCATGGCTTTGTACCTTGCATCGCTCCGGA
AATTTTCTTTCACCTGCATGATGTAATACACTAGTACTTAACTCATGAGTTGTGTACAGTGAGC
AACTTTAAAATGTTACTGTGTACTCTCTCCGTTTCACAATGTAAGTCATTCTACTTCACATCAT
ATGATGTTAATGAATCTAGATAAATATATATGTCTAGATTCATTAACATCAATATGAATGTGGG
AAATGCTAGAATGACTTACACTGTGAAACAGAGGGAGTAGTACTGTAGTCCTAATACACTAAAA
GATACCATCCAAGTAAAAGTTGGAGTTATGGTTTAAAAGATACCATAAGAACAGATACGCATGA
CCACATGCAAGTTAGATGATCAATTATCATGACAGATCAGACCTTCATGCTTCATTGAAGTCCA
TTCAGAACATATCAGGATGTTAAAGACTTGTATAAAAGAAAGGTTACACTAGACCACCAGTACA
ATACTCCCTCCATTCCAAATTGATCTACATATTTCATAGGTACACCAAGACCAAGAAAAACTAA
TAACTCTCTCATACTATATTTACTCTAGCAACAAACTCAATGCATGCACCATCCCCACTATTTC
CTAGCCAATAGGAAATCAAGATATTGCATGTGGGTTATAAATACTTGTATGCATGGATGCATGC
ATCAATGTCCATTTACTCCAATGCACAAATAACGAATAGACTTAATGAATGAACACAAATATGT
AGATCATTTAGGAATAACCTCAAAAAAACTATATGTAGATCAATTTGGAATGGAGGGAGTAGTT
GTTAAAAGGCCAACTCCCTAAATCGTTGGTCGGCATTCAAAGGAACTCGGTTAATCCCTAAGGC
ATGCAAATAATAATATGAAGTATCACAACTAGAAAAAATAATTTAAACACAATAAGAGATTGAA
CACATTCCTGCTATCATGATTAGAACATAACAGGACTGAAAACTGACAAGGACAACACCCTGGA
AGTATCATGCAGCCACTGTATTTTATAATCTGTAGATGTATACAACAAGGTCGTTGCAGGGTAA
ATTGAATGCCATTTTTTTCATGAATAAGATCTGCCTCTTTCATCTTTTGGCACAACATGTTTAC
TTGTATGGTGATAAGAGTACAAGGACTTTACTTTGGTCCAACGGCTAGTAGAGGTTATGTCTTT
ACTTTCTCGAAGCATTGATTTGAACTCAGCTATCACAGCATTGCGCACTGATTGAACTTTCTCT
TCAATCGATTTCACCCTGTGGAAAATTGGAAATGCGTCAAGTATAGTACATGAACTAATATGAT
TTAAAAATTGATATTCAAAAATGTTAATAGAAGGGTGTGCATACTTCTCGTTGAAAAGAGCATC
CCTTTCTTTTCGGTCCAAGGCTTCAAACCTTGGATCAGTGCCCCATTTTCTTTTGAATTCCTTG
TAATCCTTATTGGAGTTGATGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.235864101
Functional Information
Coding potential Y
Potential coding position 18324046-18322290(+)
18323787-18322045(-)
18322088-18323847(-)
Potential amino acid sequence MSSYRSLTWSRNNFSASPLPKSGFTARPCGSFSSLGLDSVHDALGSFMISTSKA*(+)
MLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQ
AKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQ
GRAVNPDLGKGDAEKLFRDHVKDLYEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVK
SIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAE
LKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEII
KDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYEDINSNKDYKEFKRKWGTDP
RFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDAR
YKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKL
KIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYE
DINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKD
ITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKERE
REMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPD
LGKGDAEKLFRDHVKDLYE(-)
MQKSYFVTMSRTCMRTSTPIRITRNSKENGALIQGLKPWTEKKGMLFSTRR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017