Detail information of BGIOSGA031663_circ_g.1


General Information
CircRNA Name BGIOSGA031663_circ_g.1
ID in PlantcircBase osi_circ_008534
Alias Chr10:20146770_20147359(MH63RS2), Chr10:20600505_20601094(ZS97RS2), Chr10:20146770_20147359(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 17170088-17170677  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA031663
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031663_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA031663-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGCGGATTTTAGTTCTGCTATGTACTCATTAAAAGCAACCTCTCTTTCTTCGTGCTTCATGGC
TTTGTACCTTGCATCGCTCCGGAAATTTTCTTTCACcctcatacaggtccttgacatggtcacg
aaataacttttctgcatcacctttacctaaatcaggatttactgcacggccttgtggatccttt
tcaagtct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCATACAGGTCCTTGACATGGTCACGAAATAACTTTTCTGCATCACCTTTACCTAAATCAGG
ATTTACTGCACGGCCTTGTGGATCCTTTTCAAGTCTTGGTTTGGATTCTGTCCATGATGCCTAT
GCAGAAAAAATAGCATAGTTAATATGAAGTTGTACAGTACATAGCAAAATAGCTTGTCAAATGG
AGTTCAACAAAGTGTCAAGTTACCTTGGGATCTTTTATGATTTCAACAAGTAAAGCTTGATATG
AAGACACGGCCTCTTTTCTTCGGATCTTCAATTTTACTCTTTCCATTTCCTGTTCTTCCCTTTC
TTTCCTTTTCCGCATCTCGCGCTCCCTCTCCTTTAACTTGGCCTGGGTTATTACATAGTATATG
TGAAGCTACAATGCTACATTCAGTAAACAAAGCATCAGAGTACATCAGTTAAATTGACTGACTT
GTTCATCCAGTTTGGCCTTGGCAGCTTGCTCTGCTTCCTTTTCAGCGGATTTTAGTTCTGCTAT
GTACTCATTAAAAGCAACCTCTCTTTCTTCGTGCTTCATGGCTTTGTACCTTGCATCGCTCCGG
AAATTTTCTTTCAC
Conservation Information
Conserved circRNAs osa_circ_007186
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021