Detail information of Os04g0498600_circ_g.10


General Information
CircRNA Name Os04g0498600_circ_g.10
ID in PlantcircBase osa_circ_041803
Alias NA
Organism Oryza sativa
Position chr4: 24917334-24917789  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRI-long
Parent gene Os04g0498650
Parent gene annotation Hypothetical gene. (Os04t0498650-00)
Parent gene strand -
Alternative splicing Os04g0498600_circ_g.7 Os04g0498600_circ_g.8 Os04g0498600_circ_g.9 Os04g0498600_circ_g.11 Os04g0498600_circ_g.12 Os04g0498600_circ_g.13 Os04g0498600_circ_g.14 Os04g0498600_circ_g.15 Os04g0498600_circ_g.16
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0498600-01:1
Os04t0498600-02:1
Os04t0498600-01:1
Os04t0498600-02:1
Os04t0498650-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTGAAGACGTACCTGTTGCTGTTGGGTCGCCCAAATCTGTTCTGCACTGCTTCGAGGCTGAG
AATATGGTGAACCCTGCTCCTGTTAAGGAAGGTAAAattatcccagagatggagatctgtgact
ttgacttcgaaccctgcggctactccatgaatgcaatccatggctcagcgttttctaccattca
tgtgaccc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 456
Transcript exons: 24917334-24917789
ATTATCCCAGAGATGGAGATCTGTGACTTTGACTTCGAACCCTGCGGCTACTCCATGAATGCAA
TCCATGGCTCAGCGTTTTCTACCATTCATGTGACCCCTGAGGATGGCTTCAGCTACGCCAGTTA
TGAGGTCGTGGGCTTCGACGCCTCTACTCTTGCTTATGGCGACCTGGTGAAGAGGGTCCTCAGG
TGCTTTGGCCCTTCGGAGTTCTCTGTTGCTGTTACCATCTTTGGTGGGCATGGTCATGCTGGAA
CATGGGCAAAGGAGCTCAATGCTGATGCTTACAAATGCAACAACATGGTAGAGCAGGAGCTGCC
CTGTGGTGGCCTCCTCATCTACCAGAGCTTCGACGCTACTGAAGACGTACCTGTTGCTGTTGGG
TCGCCCAAATCTGTTCTGCACTGCTTCGAGGCTGAGAATATGGTGAACCCTGCTCCTGTTAAGG
AAGGTAAA

Genomic sequence ATTATCCCAGAGATGGAGATCTGTGACTTTGACTTCGAACCCTGCGGCTACTCCATGAATGCAA
TCCATGGCTCAGCGTTTTCTACCATTCATGTGACCCCTGAGGATGGCTTCAGCTACGCCAGTTA
TGAGGTCGTGGGCTTCGACGCCTCTACTCTTGCTTATGGCGACCTGGTGAAGAGGGTCCTCAGG
TGCTTTGGCCCTTCGGAGTTCTCTGTTGCTGTTACCATCTTTGGTGGGCATGGTCATGCTGGAA
CATGGGCAAAGGAGCTCAATGCTGATGCTTACAAATGCAACAACATGGTAGAGCAGGAGCTGCC
CTGTGGTGGCCTCCTCATCTACCAGAGCTTCGACGCTACTGAAGACGTACCTGTTGCTGTTGGG
TCGCCCAAATCTGTTCTGCACTGCTTCGAGGCTGAGAATATGGTGAACCCTGCTCCTGTTAAGG
AAGGTAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.292799123
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study