Detail information of Os04g0498600_circ_g.12


General Information
CircRNA Name Os04g0498600_circ_g.12
ID in PlantcircBase osa_circ_041804
Alias NA
Organism Oryza sativa
Position chr4: 24917591-24917806  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os04g0498650
Parent gene annotation Hypothetical gene. (Os04t0498650-00)
Parent gene strand -
Alternative splicing Os04g0498600_circ_g.7 Os04g0498600_circ_g.8 Os04g0498600_circ_g.9 Os04g0498600_circ_g.10 Os04g0498600_circ_g.11 Os04g0498600_circ_g.13 Os04g0498600_circ_g.14 Os04g0498600_circ_g.15 Os04g0498600_circ_g.16
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0498600-01:1
Os04t0498600-02:1
Os04t0498600-02:1
Os04t0498650-00:1
Os04t0498600-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCTGTTGGGTCGCCCAAATCTGTTCTGCACTGCTTCGAGGCTGAGAATATGGTGAACCCTGC
TCCTGTTAAGGAAGGTAAACTGGGCAATCTTCTCCCatgggcaaaggagctcaatgctgatgct
tacaaatgcaacaacatggtagagcaggagctgccctgtggtggcctcctcatctaccagagct
tcgacgct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 216
Transcript exons: 24917591-24917806
ATGGGCAAAGGAGCTCAATGCTGATGCTTACAAATGCAACAACATGGTAGAGCAGGAGCTGCCC
TGTGGTGGCCTCCTCATCTACCAGAGCTTCGACGCTACTGAAGACGTACCTGTTGCTGTTGGGT
CGCCCAAATCTGTTCTGCACTGCTTCGAGGCTGAGAATATGGTGAACCCTGCTCCTGTTAAGGA
AGGTAAACTGGGCAATCTTCTCCC

Genomic sequence ATGGGCAAAGGAGCTCAATGCTGATGCTTACAAATGCAACAACATGGTAGAGCAGGAGCTGCCC
TGTGGTGGCCTCCTCATCTACCAGAGCTTCGACGCTACTGAAGACGTACCTGTTGCTGTTGGGT
CGCCCAAATCTGTTCTGCACTGCTTCGAGGCTGAGAATATGGTGAACCCTGCTCCTGTTAAGGA
AGGTAAACTGGGCAATCTTCTCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.148311728
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study