Detail information of Os04g0498600_circ_g.8


General Information
CircRNA Name Os04g0498600_circ_g.8
ID in PlantcircBase osa_circ_024426
Alias NA
Organism Oryza sativa
Position chr4: 24917193-24917283  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method circRNA_finder
Parent gene Os04g0498650
Parent gene annotation Hypothetical gene. (Os04t0498650-00)
Parent gene strand -
Alternative splicing Os04g0498600_circ_g.7 Os04g0498600_circ_g.9 Os04g0498600_circ_g.10 Os04g0498600_circ_g.11 Os04g0498600_circ_g.12 Os04g0498600_circ_g.13 Os04g0498600_circ_g.14 Os04g0498600_circ_g.15 Os04g0498600_circ_g.16
Support reads 2
Tissues seed
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os04t0498600-02:1
Os04t0498600-01:1
Os04t0498650-00:1
Os04t0498600-02:1
Os04t0498600-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGACAAGGAGAAAGCTTCAGTCTTTTTCAAGACTTCTGCTGATGcacccggagcaacctatgg
ttacccttgaaatgtgcatgaccggac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACCCGGAGCAACCTATGGTTACCCTTGAAATGTGCATGACCGGACTGGACAAGGAGAAAGCTT
CAGTCTTTTTCAAGACTTCTGCTGATG
Conservation Information
Conserved circRNAs NA
PMCS 0.108057692
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017