Detail information of Os06g0114000_circ_g.16


General Information
CircRNA Name Os06g0114000_circ_g.16
ID in PlantcircBase osa_circ_029410
Alias NA
Organism Oryza sativa
Position chr6: 812660-815458  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os06g0114066
Parent gene annotation Hypothetical protein. (Os06t0114066-00)
Parent gene strand +
Alternative splicing Os06g0114000_circ_g.1 Os06g0114000_circ_g.2 Os06g0114000_circ_g.3 Os06g0114000_circ_g.4 Os06g0114000_circ_g.5 Os06g0114000_circ_g.6 Os06g0114000_circ_g.7 Os06g0114000_circ_g.8 Os06g0114000_circ_g.9 Os06g0114000_circ_g.10 Os06g0114000_circ_g.11 Os06g0114000_circ_g.12 Os06g0114000_circ_g.13 Os06g0114000_circ_g.14 Os06g0114000_circ_g.15 Os06g0114000_circ_g.17 Os06g0114000_circ_g.18 Os06g0114000_circ_g.19 Os06g0114000_circ_g.20 Os06g0114000_circ_g.21 Os06g0114000_circ_g.22 Os06g0114000_circ_g.23 Os06g0114000_circ_g.24 Os06g0114000_circ_g.25 Os06g0114000_circ_g.26 Os06g0114000_circ_g.27 Os06g0114000_circ_g.28 Os06g0114000_circ_g.29 Os06g0114000_circ_g.30 Os06g0114000_circ_g.31 Os06g0114000_circ_g.32
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0114000-03:8
Os06t0114000-04:4
Os06t0114000-02:9
Os06t0114000-03:8
Os06t0114066-00:9
Os06t0114000-04:4
Os06t0114000-02:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGAAGATAGAGAAGATGGCTTCTTGTCTGATACAATTCCGGTTGGCGCAGCCATGAGGCCAAC
CGTAGAAGTGGCACCGAATGTTGAAGCCATGATTTCcttggtagcatttagggcatcctcaact
ctcaacttcttctcttttagttcggtctctgtttgtgctcccacctatcaaaagtaacaaaact
tggattac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGGTAGCATTTAGGGCATCCTCAACTCTCAACTTCTTCTCTTTTAGTTCGGTCTCTGTTTGT
GCTCCCACCTATCAAAAGTAACAAAACTTGGATTACGACCCACATAACCACATCTATCTATCTT
TCCAAACAAAGAACCAAGAAAAAGAACAGATACAGATAACATGGCATTTTGTCCATTTCTTATT
ATACCTGAATGACTGCAACACCACCAGCAAGCTTTGCAATCCTCTCATTGAGCTTTTCCTTCTC
GTATTCTTGTTCGGCAGCCTGCAAATTGGATAGATAAAAAAGCAATCAGGAGCAGGACTGATGC
TTTTCTTTTCTTGTACAAACAACACATTCAATATACAGCCTCATAATAGAGAAAGCTTTCAGTT
TGAAACCAGATGAAGCATGTAACCAATCAAGCTACATTTCCAGATATGTACAGTCTATAACTAG
ATTAAAGAAATGGTGGAATATAGAACCACTATTGTGCCAAAAAAAAAAATTTGCGAGGCACTAT
TGTGCCAAATTAACCATGGTAAACAGATATAACATACCTCGATGAGATTTTTTATTTGTGCAAC
CCTCTTAGTCACTTCTTCCTGTGTACTGCCATCACCAACAATTGTTGTTGACTCTTTGTTAAGG
ACCACCTTTGCAGCCGTTCCTAAAACTGATTTGTCTGCCTTGTCAAGTGACAGCCCAACTTCAT
CCCTGATTACAGTTGCTGCAGAGAAAAAAAATCATTATAAATAAGCAGCATTAATCATCCAGCC
AGATGCTCCAGAATCATCATAAATAAGCAGCATTAATGATCACCCAACCAAATGCACCAGATCG
CAAGTCCACCTCACCTCCAGTTAGAATGGCAATATCATCCAAGTACTGGGTCTTGCGCTCACCA
AAACCAGGGGCTTTGATAGCGGCAATTTTCAATGACCCTCTAAGCTTGTTGACAACAAGAGTAG
CAAGAGCCTCCTGCTCAATATCCTCAGCAATTATCAGAATTGGGTATGCACCTCTTATGGCCTC
CTCCAAAACATTGATAAGATCCCTTGCGTTGGTGATTTTTTTGTCCACCAAAAGAAGCTGAAAA
ATAGTGGAAACATAGTGCAATAAGAAACTGAAACAGATTAAAGCAGCATACAGCAGGGGTATGT
GTGCTCAGGCTGAAGCTACCTTGCAGTTCTCATATTCTGCAGACATTTTCTCGCTGTCAGTTAC
AAAATACGGGGAGATATAACCACGTTCAAACTGCATTCCCTCCACAACATAGAGATTATTCTCA
GAACTTCTCCCTTCTTCAAGGGTAACCACACCCTTCCTGCCAACCTTGCTCATAGCCTCTGCTA
TCATATTACCGATTTCATAATTGTTGCCAGCACTGACTGCAGCAACATCCGCAAGCTCACTGTC
TTCAACCTAAAGCAAGAAAATGTTTTTTATAAGTAGAACAAAAAAAAGCATATACTACATAGAT
AAATCATCTGATTTGACTCAGTCTAGCTAAGCATTGTTGCAACAAACACCAGGTTGCCACAACC
ACAACTAAAACATTCTGAAAGCATTAGAGCCTGACGATTATTTTACCTCCTTTGACAATTTCTT
TAGCTCTTCAACTAGTGCTTTCGCAGTTTTCTCGATACCACGTGTAATTTGCACAGGATTGGCA
CCAGCTGCAACGACCTGAAAAAGAGCAAATGAATTATTTTCACTTAGTTCACAAATTAACGACT
CTTAACAGATTGACCATACAAGTAATAGAGGTCTCATGTCTCAACTAATAGCATACCTTAACAC
CCTCAGCAATCAGCCCCTGAGCAAGCACAACAGAAGTAGTTGTGCCATCTCCAGCTAAATCATT
GGTCTTTGCTGCTGCTTGCCTAACCAACTTAGCTCCAATATTTTCAACAGGATCCTCCAGTTCA
ACCTGCAGTACAGAGATCGTTACTTGAAAATTCTGCTCAAATTCTGGAACTAGGTTACACAGAT
AATCCAGAAACCTCCAGTTGACTTGTTCAATAAGAAAATAAAATTGAAAAATTCTTTATATCAT
GACTAAAACAAATGGTGCACAATCACTATAGTTAAGTCAATGACCAGCTATCAAACTTTAGTTC
ATCTTGTCAGAGGATCATATATTAGAACCCACAAAGGTAATTATGATAGAACATGGTGTGCAAA
AATGCAACCAGCAATAGTAAACAGAAATACACTTGCGCATGAAACTTGTGAGCAAATGTGCAGA
CTGTTTTACTTTTCAAAACAAACATTTTTTTTCTGTGGAAGTATAGCATACAGCAAACAAGCAA
ATTGTAAGGAAATTCAATGCTATTTGACGCAATAAACACTGTAATATACCTCTCTTGCAACTGT
AACACCATCATTGACAATCCTAGGGGACCCATACTTGCTCTCCAAAACAACATTCCTTCCCTTT
GGTCCCAGTGTAACTCCAACAAGGTCAGCAAGCTTGTTTACTCCAGTCTGACATGTAGAAATAA
CTAATGAGTGCCTGGTCAAGGCTAAGAATCATAGTGACCAAAATTTGATAAGATGTGTCCAAGA
ACTTTGGAGCTCACCTGAAGCTTCTTGATAGCCGAGCCATCCTTGTTGAAGTACAACTCCTTGG
CAGCTTTTACCCTGAAGTTGCACTTCCTCTGAAGGCGTGCATTGCGTGGTCGGCTGGCAACAGA
AACAGATGACACCGAAGATAGAGAAGATGGCTTCTTGTCTGATACAATTCCGGTTGGCGCAGCC
ATGAGGCCAACCGTAGAAGTGGCACCGAATGTTGAAGCCATGATTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.173042098
Functional Information
Coding potential Y
Potential coding position 815413-812856(+)
815454-812662(-)
812672-815292(-)
Potential amino acid sequence MRPTVEVAPNVEAMISLVAFRASSTLNFFSFSSVSVCAPT*(+)
MASTFGATSTVGLMAAPTGIVSDKKPSSLSSVSSVSVASRPRNARLQRKCNFRVKAAKELYFNK
DGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAK
LVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVEELKKLSK
EVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGRSSENNLYVVEGMQFERGYIS
PYFVTDSEKMSAEYENCKLLLVDKKITNARDLINVLEEAIRGAYPILIIAEDIEQEALATLVVN
KLRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVIRDEVGLSLDKADKSVLGTAAKVVLNKES
TTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKK
LRVEDALNATKEIMASTFGATSTVGLMAAPTGIVSDKKPSSLSSVSSVSVASRPRNARLQRKCN
FRVKAAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVARE
VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKT
AKALVEELKKLSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGRSSENNLY
VVEGMQFERGYISPYFVTDSEKMSAEYENCKLLLVDKKITNARDLINVLEEAIRGAYPILIIAE
DIEQEALATLVVNKLRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVIRDEVGLSLDKADKSV
LGTAAKVVLNKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKLNERIAKLAGGVAVIQ
VGAQTETELKEKKLRVEDALNATKEIMASTFGATSTVGLMAAPTGIVSDKKPSSLSSVSSVSVA
SRPRNARLQRKCNFRVKAAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGS
PRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAG
ANPVQITRGIEKTAKALVEELKKLSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVV
TLEEGRSSENNLYVVEGMQFERGYISPYFVTDSEKMSAEYENCKLLLVDKKITNARDLINVLEE
AIRGAYPILIIAEDIEQEALATLVVNKLRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVIRD
EVGLSLDKADKSVLGTAAKVVLNKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKLNE
RIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKEIMASTFGATSTVGLMAAPTGIVSDKK
PSSLSSVSSVSVASRPRNARLQRKCNFRVKAAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGP
KGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQ
GLIAEGVKVVAAGANPVQITRGIEKTAKALVEELKKLSKEVEDSELADVAAVSAGNNYEIGNMI
AEAMSKVGRKGVVTLEEGRSSENNLYVVEGMQFERGYISPYFVTDSEKMSAEYENCKLLLVDKK
ITNARDLINVLEEAIRGAYPILIIAEDIEQEALATLVVNKLRGSLKIAAIKAPGFGERKTQYLD
DIAILTGATVIRDEVGLSLDKADKSVLGTAAKVVLNKESTTIVGDGSTQEEVTKRVAQIKNLIE
AAEQEYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATK(-)
MLPRKSWLQHSVPLLRLASWLRQPELYQTRSHLLYLRCHLFLLPADHAMHAFRGSATSG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017