Plant Circular RNA Database

Detail information of Os06g0114000_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os06g0114000_circ_g.5
					
						ID in PlantcircBase
						osa_circ_029399
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 811973-815458  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0114066						
					
						Parent gene annotation
						
							Hypothetical protein. (Os06t0114066-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os06g0114000_circ_g.1 Os06g0114000_circ_g.2 Os06g0114000_circ_g.3 Os06g0114000_circ_g.4 Os06g0114000_circ_g.6 Os06g0114000_circ_g.7 Os06g0114000_circ_g.8 Os06g0114000_circ_g.9 Os06g0114000_circ_g.10 Os06g0114000_circ_g.11 Os06g0114000_circ_g.12 Os06g0114000_circ_g.13 Os06g0114000_circ_g.14 Os06g0114000_circ_g.15 Os06g0114000_circ_g.16 Os06g0114000_circ_g.17 Os06g0114000_circ_g.18 Os06g0114000_circ_g.19 Os06g0114000_circ_g.20 Os06g0114000_circ_g.21 Os06g0114000_circ_g.22 Os06g0114000_circ_g.23 Os06g0114000_circ_g.24 Os06g0114000_circ_g.25 Os06g0114000_circ_g.26 Os06g0114000_circ_g.27 Os06g0114000_circ_g.28 Os06g0114000_circ_g.29 Os06g0114000_circ_g.30 Os06g0114000_circ_g.31 Os06g0114000_circ_g.32 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0114000-03:11
Os06t0114000-02:12
Os06t0114000-04:7
Os06t0114000-03:11
Os06t0114000-02:12
Os06t0114000-04:7
Os06t0114066-00:12

General Information
CircRNA Name	Os06g0114000_circ_g.5
ID in PlantcircBase	osa_circ_029399
Alias	NA
Organism	Oryza sativa
Position	chr6: 811973-815458 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0114066
Parent gene annotation	Hypothetical protein. (Os06t0114066-00)
Parent gene strand	+
Alternative splicing	Os06g0114000_circ_g.1 Os06g0114000_circ_g.2 Os06g0114000_circ_g.3 Os06g0114000_circ_g.4 Os06g0114000_circ_g.6 Os06g0114000_circ_g.7 Os06g0114000_circ_g.8 Os06g0114000_circ_g.9 Os06g0114000_circ_g.10 Os06g0114000_circ_g.11 Os06g0114000_circ_g.12 Os06g0114000_circ_g.13 Os06g0114000_circ_g.14 Os06g0114000_circ_g.15 Os06g0114000_circ_g.16 Os06g0114000_circ_g.17 Os06g0114000_circ_g.18 Os06g0114000_circ_g.19 Os06g0114000_circ_g.20 Os06g0114000_circ_g.21 Os06g0114000_circ_g.22 Os06g0114000_circ_g.23 Os06g0114000_circ_g.24 Os06g0114000_circ_g.25 Os06g0114000_circ_g.26 Os06g0114000_circ_g.27 Os06g0114000_circ_g.28 Os06g0114000_circ_g.29 Os06g0114000_circ_g.30 Os06g0114000_circ_g.31 Os06g0114000_circ_g.32
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0114000-03:11 Os06t0114000-02:12 Os06t0114000-04:7 Os06t0114000-03:11 Os06t0114000-02:12 Os06t0114000-04:7 Os06t0114066-00:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCGAAGATAGAGAAGATGGCTTCTTGTCTGATACAATTCCGGTTGGCGCAGCCATGAGGCCAAC
CGTAGAAGTGGCACCGAATGTTGAAGCCATGATTTCcttagtggggtcaatgataccagcagcc
atcaaatcctcgtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaa
cctggtaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1674
Transcript exons: 811973-812065,812143-812235,812409-812513,812660-812731,
812856-812933,813209-813378,813506-813740,813831-814073,
814242-814337,814444-814581,815013-815138,815234-815458
CTTAGTGGGGTCAATGATACCAGCAGCCATCAAATCCTCGTACTGTCCAGTTGCAGCATTGTAA
CCAAACTTGAAGTTATCGTTAGAGAGAACCTTCTCGGTAACAACGCTTCCATTAACACCAGCAT
TCTTAGCAATCAATTTAAGCGGGTAGCTCAGCGCTCTCCTTACAATTTCAGCTCCAACCTTCTG
CTCATCATTCTCCAGGTTGTCCTTGATGGCGTCAACTCTAGCTGCCAGTCTCAGAAGAGTGCAC
CCTCCACCAACAACAATACCTTCCTCAACAGCAGCCTTGGTAGCATTTAGGGCATCCTCAACTC
TCAACTTCTTCTCTTTTAGTTCGGTCTCTGTTTGTGCTCCCACCTGAATGACTGCAACACCACC
AGCAAGCTTTGCAATCCTCTCATTGAGCTTTTCCTTCTCGTATTCTTGTTCGGCAGCCTCGATG
AGATTTTTTATTTGTGCAACCCTCTTAGTCACTTCTTCCTGTGTACTGCCATCACCAACAATTG
TTGTTGACTCTTTGTTAAGGACCACCTTTGCAGCCGTTCCTAAAACTGATTTGTCTGCCTTGTC
AAGTGACAGCCCAACTTCATCCCTGATTACAGTTGCTCCAGTTAGAATGGCAATATCATCCAAG
TACTGGGTCTTGCGCTCACCAAAACCAGGGGCTTTGATAGCGGCAATTTTCAATGACCCTCTAA
GCTTGTTGACAACAAGAGTAGCAAGAGCCTCCTGCTCAATATCCTCAGCAATTATCAGAATTGG
GTATGCACCTCTTATGGCCTCCTCCAAAACATTGATAAGATCCCTTGCGTTGGTGATTTTTTTG
TCCACCAAAAGAAGCTTGCAGTTCTCATATTCTGCAGACATTTTCTCGCTGTCAGTTACAAAAT
ACGGGGAGATATAACCACGTTCAAACTGCATTCCCTCCACAACATAGAGATTATTCTCAGAACT
TCTCCCTTCTTCAAGGGTAACCACACCCTTCCTGCCAACCTTGCTCATAGCCTCTGCTATCATA
TTACCGATTTCATAATTGTTGCCAGCACTGACTGCAGCAACATCCGCAAGCTCACTGTCTTCAA
CCTCCTTTGACAATTTCTTTAGCTCTTCAACTAGTGCTTTCGCAGTTTTCTCGATACCACGTGT
AATTTGCACAGGATTGGCACCAGCTGCAACGACCTTAACACCCTCAGCAATCAGCCCCTGAGCA
AGCACAACAGAAGTAGTTGTGCCATCTCCAGCTAAATCATTGGTCTTTGCTGCTGCTTGCCTAA
CCAACTTAGCTCCAATATTTTCAACAGGATCCTCCAGTTCAACCTCTCTTGCAACTGTAACACC
ATCATTGACAATCCTAGGGGACCCATACTTGCTCTCCAAAACAACATTCCTTCCCTTTGGTCCC
AGTGTAACTCCAACAAGGTCAGCAAGCTTGTTTACTCCAGTCTGAAGCTTCTTGATAGCCGAGC
CATCCTTGTTGAAGTACAACTCCTTGGCAGCTTTTACCCTGAAGTTGCACTTCCTCTGAAGGCG
TGCATTGCGTGGTCGGCTGGCAACAGAAACAGATGACACCGAAGATAGAGAAGATGGCTTCTTG
TCTGATACAATTCCGGTTGGCGCAGCCATGAGGCCAACCGTAGAAGTGGCACCGAATGTTGAAG
CCATGATTTC
						
					

						Genomic sequence
						
							CTTAGTGGGGTCAATGATACCAGCAGCCATCAAATCCTCGTACTGTCCAGTTGCAGCATTGTAA
CCAAACTTGAAGTTATCGTTAGAGAGAACCTGGTAAAACATCATCTTTTATGTTATTCAGATGT
ACATGTGAACATATGATTTTCTGTTAGTGAACAAGATCTAACCTTCTCGGTAACAACGCTTCCA
TTAACACCAGCATTCTTAGCAATCAATTTAAGCGGGTAGCTCAGCGCTCTCCTTACAATTTCAG
CTCCAACCTAAAAAGTTCAAGCAATACATACAACAAGTCAATTAGAAAGGACAACAAATTCGAG
ATGGTCATTTCTAACCCATATACATAGTAGCAGGCACAAAAACAGAACTTTTGAGAGATGAGGT
TTATAGAACACTCGAACAAAAACAATGAATAAAGTAGATCATGGTTGTAAACCTTCTGCTCATC
ATTCTCCAGGTTGTCCTTGATGGCGTCAACTCTAGCTGCCAGTCTCAGAAGAGTGCACCCTCCA
CCAACAACAATACCTTCCTCAACAGCAGCCTGACAAAGAGGAAGCGGTTTAAAGATCCAAAGCC
AGAAGAACGTTGATATCAACTCAGTGAGCAACAAACTACCTTAATTTTTCTTCCTTAAGAAGCA
AACATTAATCTATTTCTATCTCAAAGCAGTTATAACAACAGACTAACCTTGGTAGCATTTAGGG
CATCCTCAACTCTCAACTTCTTCTCTTTTAGTTCGGTCTCTGTTTGTGCTCCCACCTATCAAAA
GTAACAAAACTTGGATTACGACCCACATAACCACATCTATCTATCTTTCCAAACAAAGAACCAA
GAAAAAGAACAGATACAGATAACATGGCATTTTGTCCATTTCTTATTATACCTGAATGACTGCA
ACACCACCAGCAAGCTTTGCAATCCTCTCATTGAGCTTTTCCTTCTCGTATTCTTGTTCGGCAG
CCTGCAAATTGGATAGATAAAAAAGCAATCAGGAGCAGGACTGATGCTTTTCTTTTCTTGTACA
AACAACACATTCAATATACAGCCTCATAATAGAGAAAGCTTTCAGTTTGAAACCAGATGAAGCA
TGTAACCAATCAAGCTACATTTCCAGATATGTACAGTCTATAACTAGATTAAAGAAATGGTGGA
ATATAGAACCACTATTGTGCCAAAAAAAAAAATTTGCGAGGCACTATTGTGCCAAATTAACCAT
GGTAAACAGATATAACATACCTCGATGAGATTTTTTATTTGTGCAACCCTCTTAGTCACTTCTT
CCTGTGTACTGCCATCACCAACAATTGTTGTTGACTCTTTGTTAAGGACCACCTTTGCAGCCGT
TCCTAAAACTGATTTGTCTGCCTTGTCAAGTGACAGCCCAACTTCATCCCTGATTACAGTTGCT
GCAGAGAAAAAAAATCATTATAAATAAGCAGCATTAATCATCCAGCCAGATGCTCCAGAATCAT
CATAAATAAGCAGCATTAATGATCACCCAACCAAATGCACCAGATCGCAAGTCCACCTCACCTC
CAGTTAGAATGGCAATATCATCCAAGTACTGGGTCTTGCGCTCACCAAAACCAGGGGCTTTGAT
AGCGGCAATTTTCAATGACCCTCTAAGCTTGTTGACAACAAGAGTAGCAAGAGCCTCCTGCTCA
ATATCCTCAGCAATTATCAGAATTGGGTATGCACCTCTTATGGCCTCCTCCAAAACATTGATAA
GATCCCTTGCGTTGGTGATTTTTTTGTCCACCAAAAGAAGCTGAAAAATAGTGGAAACATAGTG
CAATAAGAAACTGAAACAGATTAAAGCAGCATACAGCAGGGGTATGTGTGCTCAGGCTGAAGCT
ACCTTGCAGTTCTCATATTCTGCAGACATTTTCTCGCTGTCAGTTACAAAATACGGGGAGATAT
AACCACGTTCAAACTGCATTCCCTCCACAACATAGAGATTATTCTCAGAACTTCTCCCTTCTTC
AAGGGTAACCACACCCTTCCTGCCAACCTTGCTCATAGCCTCTGCTATCATATTACCGATTTCA
TAATTGTTGCCAGCACTGACTGCAGCAACATCCGCAAGCTCACTGTCTTCAACCTAAAGCAAGA
AAATGTTTTTTATAAGTAGAACAAAAAAAAGCATATACTACATAGATAAATCATCTGATTTGAC
TCAGTCTAGCTAAGCATTGTTGCAACAAACACCAGGTTGCCACAACCACAACTAAAACATTCTG
AAAGCATTAGAGCCTGACGATTATTTTACCTCCTTTGACAATTTCTTTAGCTCTTCAACTAGTG
CTTTCGCAGTTTTCTCGATACCACGTGTAATTTGCACAGGATTGGCACCAGCTGCAACGACCTG
AAAAAGAGCAAATGAATTATTTTCACTTAGTTCACAAATTAACGACTCTTAACAGATTGACCAT
ACAAGTAATAGAGGTCTCATGTCTCAACTAATAGCATACCTTAACACCCTCAGCAATCAGCCCC
TGAGCAAGCACAACAGAAGTAGTTGTGCCATCTCCAGCTAAATCATTGGTCTTTGCTGCTGCTT
GCCTAACCAACTTAGCTCCAATATTTTCAACAGGATCCTCCAGTTCAACCTGCAGTACAGAGAT
CGTTACTTGAAAATTCTGCTCAAATTCTGGAACTAGGTTACACAGATAATCCAGAAACCTCCAG
TTGACTTGTTCAATAAGAAAATAAAATTGAAAAATTCTTTATATCATGACTAAAACAAATGGTG
CACAATCACTATAGTTAAGTCAATGACCAGCTATCAAACTTTAGTTCATCTTGTCAGAGGATCA
TATATTAGAACCCACAAAGGTAATTATGATAGAACATGGTGTGCAAAAATGCAACCAGCAATAG
TAAACAGAAATACACTTGCGCATGAAACTTGTGAGCAAATGTGCAGACTGTTTTACTTTTCAAA
ACAAACATTTTTTTTCTGTGGAAGTATAGCATACAGCAAACAAGCAAATTGTAAGGAAATTCAA
TGCTATTTGACGCAATAAACACTGTAATATACCTCTCTTGCAACTGTAACACCATCATTGACAA
TCCTAGGGGACCCATACTTGCTCTCCAAAACAACATTCCTTCCCTTTGGTCCCAGTGTAACTCC
AACAAGGTCAGCAAGCTTGTTTACTCCAGTCTGACATGTAGAAATAACTAATGAGTGCCTGGTC
AAGGCTAAGAATCATAGTGACCAAAATTTGATAAGATGTGTCCAAGAACTTTGGAGCTCACCTG
AAGCTTCTTGATAGCCGAGCCATCCTTGTTGAAGTACAACTCCTTGGCAGCTTTTACCCTGAAG
TTGCACTTCCTCTGAAGGCGTGCATTGCGTGGTCGGCTGGCAACAGAAACAGATGACACCGAAG
ATAGAGAAGATGGCTTCTTGTCTGATACAATTCCGGTTGGCGCAGCCATGAGGCCAACCGTAGA
AGTGGCACCGAATGTTGAAGCCATGATTTC
						
					

			
		

Sequences
Splice junction sequence	CCGAAGATAGAGAAGATGGCTTCTTGTCTGATACAATTCCGGTTGGCGCAGCCATGAGGCCAAC CGTAGAAGTGGCACCGAATGTTGAAGCCATGATTTCcttagtggggtcaatgataccagcagcc atcaaatcctcgtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaa cctggtaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1674 Transcript exons: 811973-812065,812143-812235,812409-812513,812660-812731, 812856-812933,813209-813378,813506-813740,813831-814073, 814242-814337,814444-814581,815013-815138,815234-815458 CTTAGTGGGGTCAATGATACCAGCAGCCATCAAATCCTCGTACTGTCCAGTTGCAGCATTGTAA CCAAACTTGAAGTTATCGTTAGAGAGAACCTTCTCGGTAACAACGCTTCCATTAACACCAGCAT TCTTAGCAATCAATTTAAGCGGGTAGCTCAGCGCTCTCCTTACAATTTCAGCTCCAACCTTCTG CTCATCATTCTCCAGGTTGTCCTTGATGGCGTCAACTCTAGCTGCCAGTCTCAGAAGAGTGCAC CCTCCACCAACAACAATACCTTCCTCAACAGCAGCCTTGGTAGCATTTAGGGCATCCTCAACTC TCAACTTCTTCTCTTTTAGTTCGGTCTCTGTTTGTGCTCCCACCTGAATGACTGCAACACCACC AGCAAGCTTTGCAATCCTCTCATTGAGCTTTTCCTTCTCGTATTCTTGTTCGGCAGCCTCGATG AGATTTTTTATTTGTGCAACCCTCTTAGTCACTTCTTCCTGTGTACTGCCATCACCAACAATTG TTGTTGACTCTTTGTTAAGGACCACCTTTGCAGCCGTTCCTAAAACTGATTTGTCTGCCTTGTC AAGTGACAGCCCAACTTCATCCCTGATTACAGTTGCTCCAGTTAGAATGGCAATATCATCCAAG TACTGGGTCTTGCGCTCACCAAAACCAGGGGCTTTGATAGCGGCAATTTTCAATGACCCTCTAA GCTTGTTGACAACAAGAGTAGCAAGAGCCTCCTGCTCAATATCCTCAGCAATTATCAGAATTGG GTATGCACCTCTTATGGCCTCCTCCAAAACATTGATAAGATCCCTTGCGTTGGTGATTTTTTTG TCCACCAAAAGAAGCTTGCAGTTCTCATATTCTGCAGACATTTTCTCGCTGTCAGTTACAAAAT ACGGGGAGATATAACCACGTTCAAACTGCATTCCCTCCACAACATAGAGATTATTCTCAGAACT TCTCCCTTCTTCAAGGGTAACCACACCCTTCCTGCCAACCTTGCTCATAGCCTCTGCTATCATA TTACCGATTTCATAATTGTTGCCAGCACTGACTGCAGCAACATCCGCAAGCTCACTGTCTTCAA CCTCCTTTGACAATTTCTTTAGCTCTTCAACTAGTGCTTTCGCAGTTTTCTCGATACCACGTGT AATTTGCACAGGATTGGCACCAGCTGCAACGACCTTAACACCCTCAGCAATCAGCCCCTGAGCA AGCACAACAGAAGTAGTTGTGCCATCTCCAGCTAAATCATTGGTCTTTGCTGCTGCTTGCCTAA CCAACTTAGCTCCAATATTTTCAACAGGATCCTCCAGTTCAACCTCTCTTGCAACTGTAACACC ATCATTGACAATCCTAGGGGACCCATACTTGCTCTCCAAAACAACATTCCTTCCCTTTGGTCCC AGTGTAACTCCAACAAGGTCAGCAAGCTTGTTTACTCCAGTCTGAAGCTTCTTGATAGCCGAGC CATCCTTGTTGAAGTACAACTCCTTGGCAGCTTTTACCCTGAAGTTGCACTTCCTCTGAAGGCG TGCATTGCGTGGTCGGCTGGCAACAGAAACAGATGACACCGAAGATAGAGAAGATGGCTTCTTG TCTGATACAATTCCGGTTGGCGCAGCCATGAGGCCAACCGTAGAAGTGGCACCGAATGTTGAAG CCATGATTTC
Genomic sequence	CTTAGTGGGGTCAATGATACCAGCAGCCATCAAATCCTCGTACTGTCCAGTTGCAGCATTGTAA CCAAACTTGAAGTTATCGTTAGAGAGAACCTGGTAAAACATCATCTTTTATGTTATTCAGATGT ACATGTGAACATATGATTTTCTGTTAGTGAACAAGATCTAACCTTCTCGGTAACAACGCTTCCA TTAACACCAGCATTCTTAGCAATCAATTTAAGCGGGTAGCTCAGCGCTCTCCTTACAATTTCAG CTCCAACCTAAAAAGTTCAAGCAATACATACAACAAGTCAATTAGAAAGGACAACAAATTCGAG ATGGTCATTTCTAACCCATATACATAGTAGCAGGCACAAAAACAGAACTTTTGAGAGATGAGGT TTATAGAACACTCGAACAAAAACAATGAATAAAGTAGATCATGGTTGTAAACCTTCTGCTCATC ATTCTCCAGGTTGTCCTTGATGGCGTCAACTCTAGCTGCCAGTCTCAGAAGAGTGCACCCTCCA CCAACAACAATACCTTCCTCAACAGCAGCCTGACAAAGAGGAAGCGGTTTAAAGATCCAAAGCC AGAAGAACGTTGATATCAACTCAGTGAGCAACAAACTACCTTAATTTTTCTTCCTTAAGAAGCA AACATTAATCTATTTCTATCTCAAAGCAGTTATAACAACAGACTAACCTTGGTAGCATTTAGGG CATCCTCAACTCTCAACTTCTTCTCTTTTAGTTCGGTCTCTGTTTGTGCTCCCACCTATCAAAA GTAACAAAACTTGGATTACGACCCACATAACCACATCTATCTATCTTTCCAAACAAAGAACCAA GAAAAAGAACAGATACAGATAACATGGCATTTTGTCCATTTCTTATTATACCTGAATGACTGCA ACACCACCAGCAAGCTTTGCAATCCTCTCATTGAGCTTTTCCTTCTCGTATTCTTGTTCGGCAG CCTGCAAATTGGATAGATAAAAAAGCAATCAGGAGCAGGACTGATGCTTTTCTTTTCTTGTACA AACAACACATTCAATATACAGCCTCATAATAGAGAAAGCTTTCAGTTTGAAACCAGATGAAGCA TGTAACCAATCAAGCTACATTTCCAGATATGTACAGTCTATAACTAGATTAAAGAAATGGTGGA ATATAGAACCACTATTGTGCCAAAAAAAAAAATTTGCGAGGCACTATTGTGCCAAATTAACCAT GGTAAACAGATATAACATACCTCGATGAGATTTTTTATTTGTGCAACCCTCTTAGTCACTTCTT CCTGTGTACTGCCATCACCAACAATTGTTGTTGACTCTTTGTTAAGGACCACCTTTGCAGCCGT TCCTAAAACTGATTTGTCTGCCTTGTCAAGTGACAGCCCAACTTCATCCCTGATTACAGTTGCT GCAGAGAAAAAAAATCATTATAAATAAGCAGCATTAATCATCCAGCCAGATGCTCCAGAATCAT CATAAATAAGCAGCATTAATGATCACCCAACCAAATGCACCAGATCGCAAGTCCACCTCACCTC CAGTTAGAATGGCAATATCATCCAAGTACTGGGTCTTGCGCTCACCAAAACCAGGGGCTTTGAT AGCGGCAATTTTCAATGACCCTCTAAGCTTGTTGACAACAAGAGTAGCAAGAGCCTCCTGCTCA ATATCCTCAGCAATTATCAGAATTGGGTATGCACCTCTTATGGCCTCCTCCAAAACATTGATAA GATCCCTTGCGTTGGTGATTTTTTTGTCCACCAAAAGAAGCTGAAAAATAGTGGAAACATAGTG CAATAAGAAACTGAAACAGATTAAAGCAGCATACAGCAGGGGTATGTGTGCTCAGGCTGAAGCT ACCTTGCAGTTCTCATATTCTGCAGACATTTTCTCGCTGTCAGTTACAAAATACGGGGAGATAT AACCACGTTCAAACTGCATTCCCTCCACAACATAGAGATTATTCTCAGAACTTCTCCCTTCTTC AAGGGTAACCACACCCTTCCTGCCAACCTTGCTCATAGCCTCTGCTATCATATTACCGATTTCA TAATTGTTGCCAGCACTGACTGCAGCAACATCCGCAAGCTCACTGTCTTCAACCTAAAGCAAGA AAATGTTTTTTATAAGTAGAACAAAAAAAAGCATATACTACATAGATAAATCATCTGATTTGAC TCAGTCTAGCTAAGCATTGTTGCAACAAACACCAGGTTGCCACAACCACAACTAAAACATTCTG AAAGCATTAGAGCCTGACGATTATTTTACCTCCTTTGACAATTTCTTTAGCTCTTCAACTAGTG CTTTCGCAGTTTTCTCGATACCACGTGTAATTTGCACAGGATTGGCACCAGCTGCAACGACCTG AAAAAGAGCAAATGAATTATTTTCACTTAGTTCACAAATTAACGACTCTTAACAGATTGACCAT ACAAGTAATAGAGGTCTCATGTCTCAACTAATAGCATACCTTAACACCCTCAGCAATCAGCCCC TGAGCAAGCACAACAGAAGTAGTTGTGCCATCTCCAGCTAAATCATTGGTCTTTGCTGCTGCTT GCCTAACCAACTTAGCTCCAATATTTTCAACAGGATCCTCCAGTTCAACCTGCAGTACAGAGAT CGTTACTTGAAAATTCTGCTCAAATTCTGGAACTAGGTTACACAGATAATCCAGAAACCTCCAG TTGACTTGTTCAATAAGAAAATAAAATTGAAAAATTCTTTATATCATGACTAAAACAAATGGTG CACAATCACTATAGTTAAGTCAATGACCAGCTATCAAACTTTAGTTCATCTTGTCAGAGGATCA TATATTAGAACCCACAAAGGTAATTATGATAGAACATGGTGTGCAAAAATGCAACCAGCAATAG TAAACAGAAATACACTTGCGCATGAAACTTGTGAGCAAATGTGCAGACTGTTTTACTTTTCAAA ACAAACATTTTTTTTCTGTGGAAGTATAGCATACAGCAAACAAGCAAATTGTAAGGAAATTCAA TGCTATTTGACGCAATAAACACTGTAATATACCTCTCTTGCAACTGTAACACCATCATTGACAA TCCTAGGGGACCCATACTTGCTCTCCAAAACAACATTCCTTCCCTTTGGTCCCAGTGTAACTCC AACAAGGTCAGCAAGCTTGTTTACTCCAGTCTGACATGTAGAAATAACTAATGAGTGCCTGGTC AAGGCTAAGAATCATAGTGACCAAAATTTGATAAGATGTGTCCAAGAACTTTGGAGCTCACCTG AAGCTTCTTGATAGCCGAGCCATCCTTGTTGAAGTACAACTCCTTGGCAGCTTTTACCCTGAAG TTGCACTTCCTCTGAAGGCGTGCATTGCGTGGTCGGCTGGCAACAGAAACAGATGACACCGAAG ATAGAGAAGATGGCTTCTTGTCTGATACAATTCCGGTTGGCGCAGCCATGAGGCCAACCGTAGA AGTGGCACCGAATGTTGAAGCCATGATTTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.262851229

Conservation Information
Conserved circRNAs	NA
PMCS	0.262851229

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							815413-812033(+)
815454-811975(-)
						
					

						Potential amino acid sequence
						
							MRPTVEVAPNVEAMISLVGSMIPAAIKSSYCPVAAL*(+)
MASTFGATSTVGLMAAPTGIVSDKKPSSLSSVSSVSVASRPRNARLQRKCNFRVKAAKELYFNK
DGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAK
LVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVEELKKLSK
EVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGRSSENNLYVVEGMQFERGYIS
PYFVTDSEKMSAEYENCKLLLVDKKITNARDLINVLEEAIRGAYPILIIAEDIEQEALATLVVN
KLRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVIRDEVGLSLDKADKSVLGTAAKVVLNKES
TTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKK
LRVEDALNATKAAVEEGIVVGGGCTLLRLAARVDAIKDNLENDEQKVGAEIVRRALSYPLKLIA
KNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKEIMASTFGATSTVGLMAAPT
GIVSDKKPSSLSSVSSVSVASRPRNARLQRKCNFRVKAAKELYFNKDGSAIKKLQTGVNKLADL
VGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTT
TSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVEELKKLSKEVEDSELADVAAVSAGNN
YEIGNMIAEAMSKVGRKGVVTLEEGRSSENNLYVVEGMQFERGYISPYFVTDSEKMSAEYENCK
LLLVDKKITNARDLINVLEEAIRGAYPILIIAEDIEQEALATLVVNKLRGSLKIAAIKAPGFGE
RKTQYLDDIAILTGATVIRDEVGLSLDKADKSVLGTAAKVVLNKESTTIVGDGSTQEEVTKRVA
QIKNLIEAAEQEYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGI
VVGGGCTLLRLAARVDAIKDNLENDEQKVGAEIVRRALSYPLKLIAKNAGVNGSVVTEKVLSND
NFKFGYNAATGQYEDLMAAGIIDPTKEIMASTFGATSTVGLMAAPTGIVSDKKPSSLSSVSSVS
VASRPRNARLQRKCNFRVKAAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKY
GSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVA
AGANPVQITRGIEKTAKALVEELKKLSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKG
VVTLEEGRSSENNLYVVEGMQFERGYISPYFVTDSEKMSAEYENCKLLLVDKKITNARDLINVL
EEAIRGAYPILIIAEDIEQEALATLVVNKLRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVI
RDEVGLSLDKADKSVLGTAAKVVLNKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKL
NERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAARVDAI
KDNLENDEQKVGAEIVRRALSYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMA
AGIIDPTKEIMASTFGATSTVGLMAAPTGIVSDKKPSSLSSVSSVSVASRPRNARLQRKCNFRV
KAAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVEL
EDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKA
LVEELKKLSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGRSSENNLYVVE
GMQFERGYISPYFVTDSEKMSAEYENCKLLLVDKKITNARDLINVLEEAIRGAYPILIIAEDIE
QEALATLVVNKLRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVIRDEVGLSLDKADKSVLGT
AAKVVLNKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKLNERIAKLAGGVAVIQVGA
QTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAARVDAIKDNLENDEQKVGAEIVRR
ALSYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTK(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	815413-812033(+) 815454-811975(-)
Potential amino acid sequence	MRPTVEVAPNVEAMISLVGSMIPAAIKSSYCPVAAL*(+) MASTFGATSTVGLMAAPTGIVSDKKPSSLSSVSSVSVASRPRNARLQRKCNFRVKAAKELYFNK DGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAK LVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVEELKKLSK EVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGRSSENNLYVVEGMQFERGYIS PYFVTDSEKMSAEYENCKLLLVDKKITNARDLINVLEEAIRGAYPILIIAEDIEQEALATLVVN KLRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVIRDEVGLSLDKADKSVLGTAAKVVLNKES TTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKK LRVEDALNATKAAVEEGIVVGGGCTLLRLAARVDAIKDNLENDEQKVGAEIVRRALSYPLKLIA KNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKEIMASTFGATSTVGLMAAPT GIVSDKKPSSLSSVSSVSVASRPRNARLQRKCNFRVKAAKELYFNKDGSAIKKLQTGVNKLADL VGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTT TSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVEELKKLSKEVEDSELADVAAVSAGNN YEIGNMIAEAMSKVGRKGVVTLEEGRSSENNLYVVEGMQFERGYISPYFVTDSEKMSAEYENCK LLLVDKKITNARDLINVLEEAIRGAYPILIIAEDIEQEALATLVVNKLRGSLKIAAIKAPGFGE RKTQYLDDIAILTGATVIRDEVGLSLDKADKSVLGTAAKVVLNKESTTIVGDGSTQEEVTKRVA QIKNLIEAAEQEYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGI VVGGGCTLLRLAARVDAIKDNLENDEQKVGAEIVRRALSYPLKLIAKNAGVNGSVVTEKVLSND NFKFGYNAATGQYEDLMAAGIIDPTKEIMASTFGATSTVGLMAAPTGIVSDKKPSSLSSVSSVS VASRPRNARLQRKCNFRVKAAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKY GSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVA AGANPVQITRGIEKTAKALVEELKKLSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKG VVTLEEGRSSENNLYVVEGMQFERGYISPYFVTDSEKMSAEYENCKLLLVDKKITNARDLINVL EEAIRGAYPILIIAEDIEQEALATLVVNKLRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVI RDEVGLSLDKADKSVLGTAAKVVLNKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKL NERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAARVDAI KDNLENDEQKVGAEIVRRALSYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMA AGIIDPTKEIMASTFGATSTVGLMAAPTGIVSDKKPSSLSSVSSVSVASRPRNARLQRKCNFRV KAAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVEL EDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKA LVEELKKLSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGRSSENNLYVVE GMQFERGYISPYFVTDSEKMSAEYENCKLLLVDKKITNARDLINVLEEAIRGAYPILIIAEDIE QEALATLVVNKLRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVIRDEVGLSLDKADKSVLGT AAKVVLNKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKLNERIAKLAGGVAVIQVGA QTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAARVDAIKDNLENDEQKVGAEIVRR ALSYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0114000_circ_g.5

Address

Any questions?

Supported by