Detail information of Os03g0773600_circ_g.13


General Information
CircRNA Name Os03g0773600_circ_g.13
ID in PlantcircBase osa_circ_022062
Alias NA
Organism Oryza sativa
Position chr3: 32066923-32069213  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0773600
Parent gene annotation Kinesin, motor region domain containing protein. (Os03t0773600-0
1);Hypothetical conserved gene. (Os03t0773600-02)
Parent gene strand +
Alternative splicing Os03g0773600_circ_g.1 Os03g0773600_circ_g.2 Os03g0773600_circ_g.3 Os03g0773600_circ_g.4 Os03g0773600_circ_g.5 Os03g0773600_circ_g.6 Os03g0773600_circ_g.7 Os03g0773600_circ_g.8 Os03g0773600_circ_g.9 Os03g0773600_circ_g.10 Os03g0773600_circ_g.11 Os03g0773600_circ_g.12 Os03g0773600_circ_g.14 Os03g0773600_circ_g.15 Os03g0773600_circ_g.16 Os03g0773600_circ_g.17 Os03g0773600_circ_g.18 Os03g0773600_circ_g.19 Os03g0773600_circ_g.20
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0773600-01:8
Os03t0773600-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGCATTAATCTGCAGAAAGCACTGTTTGAACTTGAAGAAACCAATAAGCGCAATCGAATGGAG
CTCCAGCATCTTGATGATGCAATTGCAAGACAACAGtgggaaaacttatacaatggttggaacc
catagtgatcctggtcttatggttctgagctttcgcacaatctttgatctggtaaagaaggatg
acagtaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1033
Transcript exons: 32066923-32067067,32067174-32067269,32067740-32067831,32
068103-32068204,32068298-32068444,32068523-32068673,3206
8825-32068887,32068977-32069213
TGGGAAAACTTATACAATGGTTGGAACCCATAGTGATCCTGGTCTTATGGTTCTGAGCTTTCGC
ACAATCTTTGATCTGGTAAAGAAGGATGACAGTAAAGATACGTTTGAGGTCTCATGTTCATATC
TTGAAGTGTACAATGAGGTTATCTATGATTTGCTTGAAAAATCGTCAGGTCACCTGGAGCTTCG
TGAAGATCCTGTGCATGGTATAATGGTTGCTGGTTTAAGAAGCATTAAGGTTCACTCAGCAGAT
AAGATTCTTGAACTCTTGAACATAGGCAACAGTCGGCGCAAGACAGAGAGCACAGAAGCAAACT
CAACTTCTTCACGGTCACATGCTGTCCTGGAGATAACTGTGAAGCGAAAACAAAAAGGACAATA
TGGTAGTCAGGTTCTTCGTGGAAAGCTTGCGTTGGTTGACCTTGCGGGCAGTGAGAGGGCCTCT
GAAACAAACAACTTTGGGCAAAAGCTTAGAGATGGAGCCAACATTAACCGTTCACTTCTAGCGC
TAGCGAACTGCATCAATGCCCTTGGCAAGCAAAACAAGAAAGGTCTTGCATATGTTCCATATCG
AAACAGCAAATTAACACGAATCCTGAAGGATGGGCTCTCTGGTAACTCTCGTACTGTTATGGTT
GCTACGATATCACCAGCTGATGATCAGTATCATCACACCACCAATACACTCAAGTATGCTGATC
GTGCAAAGGAGATAAAAACACATGTCCATAAAAACATTGGACATCTTGACACCCATGTTGAAGA
CTACAAAAGGATGATTGACAATCTCCAGGTTGAGGTTTCTCAGTTGAAGAAGGAATTAGCTGAG
AAGGAGCATCAGTTAAGTGTAAAACCTACTGAAAAAGCTGCAGACAATGAGCTATCTTGGCTAA
ATATCTTGAGCCAGGAAACTGGCGAGAATGTTCAAGAACGCATTAATCTGCAGAAAGCACTGTT
TGAACTTGAAGAAACCAATAAGCGCAATCGAATGGAGCTCCAGCATCTTGATGATGCAATTGCA
AGACAACAG

Genomic sequence TGGGAAAACTTATACAATGGTTGGAACCCATAGTGATCCTGGTCTTATGGTTCTGAGCTTTCGC
ACAATCTTTGATCTGGTAAAGAAGGATGACAGTAAAGATACGTTTGAGGTCTCATGTTCATATC
TTGAAGTGTACAATGAGGTAATGTGCAATATATAGTTTCTTAAAAAAGTTAACTATTAGTCCTT
AAATTCTCTATACTACATATAAACTTTCGTGAAAAAACTCTGTGCTTTCTGAATTCCAGGTTAT
CTATGATTTGCTTGAAAAATCGTCAGGTCACCTGGAGCTTCGTGAAGATCCTGTGCATGGTATA
ATGGTTGCTGGTTTAAGAAGCATTAAGGTTTCTAGCTTCCTCTAATCTGTTTAATTTTTGTGAT
AATTAGAAAACAAATGCCTTGTAGTAATAGTGTCAATTCTGGCATTTTTTGTTTTGTTTTCTTC
ATATTTTTTTGGCCATCCTAATGCTTGTAACCTCTTTTGTGCATATAATATCCTCTCGTCATTG
AGCCAATTAAGGAAGAGATGATTTTTAAGTTGCACTATTTAATTTATCTGCATGGTTTTTTTTT
TGTCCTTTCTGGAAGAAATACTTGTAGATACCAACCCTTTCAGACTTCTTCAGCTATTTATTCA
TCTTTTTTCTTTTAATGATTAGTTCATACAACCAATTTCTGCCCTTTGTAACAACAGCAAGTGG
TCTACTGTGTTTGCATGCCATTCCTCATCATATTCGTAAAAATAGGCCTAGTCAACATTCCATT
CACCTCTACATATAAGAATATTTTGATGATCAATCTTTTATTTGCTTAGGTTCACTCAGCAGAT
AAGATTCTTGAACTCTTGAACATAGGCAACAGTCGGCGCAAGACAGAGAGCACAGAAGCAAACT
CAACTTCTTCACGGTAATTACATATTGTGAATTTCCTTCTTTCCTTTCTGTAAGTAGATGCTGT
TATGGCCATTCAGCTTTTGAAGAATTTGTTGATATCTTGCTTAGCAAAACAATGCATTTCTATC
TGTTTAATGAACTGCTATTTAAGGAGGATACTTAATATCTTAATCTGATGTATCACTGAGATTT
TGTTTCTACGAAGACAGCTGCTGTAGGACGTAGTGCTGGACATCTTTACTACATTCTATTAATA
AGATTTATCCTTTTTTTTTAAATCCAAGGTCACATGCTGTCCTGGAGATAACTGTGAAGCGAAA
ACAAAAAGGACAATATGGTAGTCAGGTTCTTCGTGGAAAGCTTGCGTTGGTTGACCTTGCGGGC
AGGTAATACACTAATACCTACTCCTTTTTGGATTGTTTTTCTCATTTCACCCTGCTAAGAAAGT
AAGCTATAAAGCAACGCTTATATTATAACAGTGAGAGGGCCTCTGAAACAAACAACTTTGGGCA
AAAGCTTAGAGATGGAGCCAACATTAACCGTTCACTTCTAGCGCTAGCGAACTGCATCAATGCC
CTTGGCAAGCAAAACAAGAAAGGTCTTGCATATGTTCCATATCGAAACAGGTATTTCCATTTTC
AGGTGTATCATTCTGGAATCCATCGTTTTAAAAATCTTAGTTATATGACAATGGTACTCTGCAG
CAAATTAACACGAATCCTGAAGGATGGGCTCTCTGGTAACTCTCGTACTGTTATGGTTGCTACG
ATATCACCAGCTGATGATCAGTATCATCACACCACCAATACACTCAAGTATGCTGATCGTGCAA
AGGAGATAAAAACACATGTCCATGTAAGGGGCCATTTCTTTTAGTCTGCATAACAAATTACAAG
ATGCTGTGTCTATGTAGTCATCACTATTCTCACCCATGCAAAATATTTAATTGGTTCTGAATCA
TAAATGTGAAAAAACCAGTTCTTATGTTGTTTGTTGTCCTGTACAGAAAAACATTGGACATCTT
GACACCCATGTTGAAGACTACAAAAGGATGATTGACAATCTCCAGGTTTGCCTTACTGAAAAAA
CACAAATGAACTTTCTACAATTCTATCAGCACTCCATCACATTAAAATATGTTCCATTATGACT
TTGTAGGTTGAGGTTTCTCAGTTGAAGAAGGAATTAGCTGAGAAGGAGCATCAGTTAAGTGTAA
AACCTACTGAAAAAGCTGCAGACAATGAGCTATCTTGGCTAAATATCTTGAGCCAGGAAACTGG
CGAGAATGTTCAAGAACGCATTAATCTGCAGAAAGCACTGTTTGAACTTGAAGAAACCAATAAG
CGCAATCGAATGGAGCTCCAGCATCTTGATGATGCAATTGCAAGACAACAG
Conservation Information
Conserved circRNAs osi_circ_013708
PMCS 0.345083924
Functional Information
Coding potential Y
Potential coding position 32066940-32066952(+)
32069105-32066952(+)
32066955-32069121(-)
Potential amino acid sequence MVGTHSDPGLMVLSFRTIFDLVKKDDSKDTFEVSCSYLEVYNEVIYDLLEKSSGHLELREDPVH
GIMVAGLRSIKVHSADKILELLNIGNSRRKTESTEANSTSSRSHAVLEITVKRKQKGQYGSQVL
RGKLALVDLAGSERASETNNFGQKLRDGANINRSLLALANCINALGKQNKKGLAYVPYRNSKLT
RILKDGLSGNSRTVMVATISPADDQYHHTTNTLKYADRAKEIKTHVHKNIGHLDTHVEDYKRMI
DNLQVEVSQLKKELAEKEHQLSVKPTEKAADNELSWLNILSQETGENVQERINLQKALFELEET
NKRNRMELQHLDDAIARQQWENLYNGWNP*(+)
MFKNALICRKHCLNLKKPISAIEWSSSILMMQLQDNSGKTYTMVGTHSDPGLMVLSFRTIFDLV
KKDDSKDTFEVSCSYLEVYNEVIYDLLEKSSGHLELREDPVHGIMVAGLRSIKVHSADKILELL
NIGNSRRKTESTEANSTSSRSHAVLEITVKRKQKGQYGSQVLRGKLALVDLAGSERASETNNFG
QKLRDGANINRSLLALANCINALGKQNKKGLAYVPYRNSKLTRILKDGLSGNSRTVMVATISPA
DDQYHHTTNTLKYADRAKEIKTHVHKNIGHLDTHVEDYKRMIDNLQVEVSQLKKELAEKEHQLS
VKPTEKAADNELSWLNILSQETGENVQERINLQKALFELEETNKRNRMELQHLDDAIARQQWEN
LYNGWNP*(+)
MGSNHCISFPTVVLQLHHQDAGAPFDCAYWFLQVQTVLSAD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017