Detail information of BGIOSGA003599_circ_g.3


General Information
CircRNA Name BGIOSGA003599_circ_g.3
ID in PlantcircBase osi_circ_009526
Alias Chr01:18239657_18245597(MH63RS2), Chr01:18239657_18245597(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 19136469-19142410  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2
Parent gene BGIOSGA003599
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA003599_circ_g.1 BGIOSGA003599_circ_g.2 BGIOSGA003599_circ_g.4 BGIOSGA003599_circ_g.5 BGIOSGA003599_circ_g.6 BGIOSGA003599_circ_g.7 BGIOSGA003599_circ_g.8 BGIOSGA003599_circ_g.9
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA003599-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGATGAAGAAATATCAGAAGGACTTTTCGGGCTGGTGTGGTGAATGTAAACGTGAGAAGAAG
GAGAGGCAGATTCATGCTGTTAAAGCAACTAAGCTGggttcaaaggcacagagaatacagacag
agaatactcaaccattataaggttagcgtttcagcatagctgacattattcgaattatctctaa
atattttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osa_circ_001845
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR5083
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021