Detail information of BGIOSGA003599_circ_g.1


General Information
CircRNA Name BGIOSGA003599_circ_g.1
ID in PlantcircBase osi_circ_009524
Alias Chr01:18239657_18241334(MH63RS2), Chr01:18461962_18463639(ZS97RS2), Chr01:18239657_18241334(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 19136469-19138146  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA003599
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA003599_circ_g.2 BGIOSGA003599_circ_g.3 BGIOSGA003599_circ_g.4 BGIOSGA003599_circ_g.5 BGIOSGA003599_circ_g.6 BGIOSGA003599_circ_g.7 BGIOSGA003599_circ_g.8 BGIOSGA003599_circ_g.9
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA003599-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTAATCTTCAGTATTATATCCTGAGGTTGGTGGAGGAACATTAGATACACACCATGCTTTTG
TTGTTGAGTATGGGAAAGACAGGGATGTTGAACTCGggttcaaaggcacagagaatacagacag
agaatactcaaccattataaggttagcgtttcagcatagctgacattattcgaattatctctaa
atattttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTCAAAGGCACAGAGAATACAGACAGAGAATACTCAACCATTATAAGGTTAGCGTTTCAGCA
TAGCTGACATTATTCGAATTATCTCTAAATATTTTGAAATGGGGGAATATGCATGTTTTTTCTT
GTGCATAACTATATTTGCACATAGAAATATGCAGTCCAGGAATTCAGGAATTATATCATATATT
GTATGATTTGTTATTTCTTTTGAGCGTTAAGCAGGGTGTGATATGAGATGTTTATGGAACAATT
GTATTGGTCCTGTACGACCAGCCATATGTGATTTCCCAGGTGATTGCATGAGCAAAATCTTTGT
TCTTGAAGAGTGCAGCTGGTTCCTGGTACAAAAGGGCACAATTGGTTGGACAAGAGGTCCGTGA
AGAGTGTAGGGTGGTAGGATACTGGAAGATCATAGATAAAAGAATTACAATCCAGGCATCCAGT
ATGCGCTAGTAATTCAATATTTACAACTGTTTGAATCAAGTATGCATGACTGTGACAGAGCACT
ACAGGTACCATGAATAATTTAGTTATGGAGAGCCTTCCGAGATTTGGTTATCCAATCAGCATTT
CCTGTGTTGGTTGCCTTGTGTGCATGATCTTAGAAAGCTGCTTATGGAATATTTATCTTATTAT
GTCAAACGAATTTGGAATTAAATTTCTATGTTTACATGGCAAAATATAAAAAAATATACTTCTT
TTATTAAATGAAGTATACTTCTTTTTTATTAAAAAATATACTTCTTTCTATGTCGATATGGCAA
AATAAATTTCTATGGCATGAGCGGTAATGAATCCCCAGACAGGAGAATTAAATGAATTGTGAGC
TGACGTGGGTTTCAGTCAACAATATGTGGGTTCCTTGATTTCACTAACAGCTAGAGCTCAAGCA
AGTGGAAATATCAATGAAACTAAATGGCACCATGTGTTTGTTACAGTTCATTCATGTGTACACT
ACAGTTGTAGTGTATGGACTGGAAGTCATCAATCTTATTGAGAAATTGAAACTAAATCTATTTG
TTTTTTGTGCTAGTAATAATAACTTATATTTTTTTTATTTTCCTGACAGCCACTTCATAAAGAG
CTATACAAAATGCGCCCTTCATCGTTCTTTTTACCAACATTCCTTGAAGCTATTAGGACCAATA
CAGAAGAAAGCTTTAGAAGCATTATGACTGAGCCAGTTCCTGGTGTTTATTCATTTGCTATGTT
ACAGCCTAATTTTTGTGAGATGCTATTACAGGAGGTATGGTAGCATATAACATACAATTTTGAT
ATTGCTATATCATGTTTTGTTACAAACTTACAATGATAAAACAATGTTTTACACCTTGTAGGTA
GAGAACTTCGAAAAATGGGTCCACACAATGAAATTTAAGATAATGAGGCCAAATACAATGAACA
AGTATGGTGCTGTCCTTGATGATTTTGGCCTGGAAGTTATGCTGAACCAATTCATGGAACAGTT
CATAGCTCCAATGTCTACAGGTTATCTTATCGACTGCTATCCTTGTTAAATAGAGGCAGAATCA
CTAGCATTTTCAAAATATATTTCCTATATTGATTTTATGCTGTGTTAATCTTCAGTATTATATC
CTGAGGTTGGTGGAGGAACATTAGATACACACCATGCTTTTGTTGTTGAGTATGGGAAAGACAG
GGATGTTGAACTCG
Conservation Information
Conserved circRNAs osa_circ_001843
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021