Detail information of BGIOSGA003599_circ_g.9


General Information
CircRNA Name BGIOSGA003599_circ_g.9
ID in PlantcircBase osi_circ_009529
Alias Chr01:18242750_18245597(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 19139562-19142410  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA003599
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA003599_circ_g.1 BGIOSGA003599_circ_g.2 BGIOSGA003599_circ_g.3 BGIOSGA003599_circ_g.4 BGIOSGA003599_circ_g.5 BGIOSGA003599_circ_g.6 BGIOSGA003599_circ_g.7 BGIOSGA003599_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA003599-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGATGAAGAAATATCAGAAGGACTTTTCGGGCTGGTGTGGTGAATGTAAACGTGAGAAGAAG
GAGAGGCAGATTCATGCTGTTAAAGCAACTAAGCTGggtttccacgttgacgattctgaggtta
cattgaatgtttgccttggcaagcaattctctggtggtgagttatactttcgtggcatccgttg
tgagaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTTCCACGTTGACGATTCTGAGGTTACATTGAATGTTTGCCTTGGCAAGCAATTCTCTGGTG
GTGAGTTATACTTTCGTGGCATCCGTTGTGAGAATCATGTGAATTCAGAGACACAGCATGAGGT
AGATGAACTTTTATGTTTTAGTTGCATTTAATATCTATTTTTAAATTTCAAACCCACCTCTTTT
CTTCTCTTCTGTGAGTGCATTTATGTGGTGTTGAAACTTATTTTGTTCAGATTTTTTTTTTTTG
CATGAAACTTGTCATTTACTTGCAACATATTCTGGTTAATTTGTTCACGGAAGTTACACAATAC
ATAATTGAAGATATATATTTTTTTACCCTTTTCAATTTCATTACTCATGTTGCAGGAAATGTTC
GATTACTCTCATGTTCCTGGACGAGCTGTGCTCCATCGTGGTCGTCATAGGCATGGTGCCCGAC
CGACATCATCTGGGCTCAGAATCAATCTTCTTTTGTGGTGCAGAAGGTATACAAGTCTTACAGA
TCTTCCCATACAATTTTGATTGTCAAAGATTTCAGTGACCTTTTGTCTTGCTTGTTTAAAGCAC
ATACTGGGCATGTATTATAGCTACCGTTTATGCGGACATTTGAGGTTTAGTTCAGTGAAATATT
ATGACCATATATATGTATGCATTTTTTTCCTTAACTTATCATGTTTTATTGGTGCTTGTTTCAC
GGAAAGTTGTGTTGGTATTGCGTAGTTCATGTCAAGGGTAAGAAACCTGAAACTACAAAATACA
CCTGATCAAAGGCCTCTCACGAGTGCTGTGGAATCAAGGTAGTTAGTGGAATCTTTACTGATTT
AAGATTTTGCTGTTACAGCTTGCAAAAGTTACGGAGTCCTATTGTTTTGAAGGGATTAGCTATT
TCCAACATGGTTGTAGTCTCAACGAAGACATTCCTCATAGTCAAATGTTGACAATAGTTCCTGG
AAATCAATTTGTAGATTGATTACTGATAAGACAGCTCAAGCGAGTCTAGCCTGAGATATAAAAC
CACACTAGCCAATAAAAAAGGTAGCCAAACAAAACTAGGGAGTTTTCATCCAGGCGAACAAGTA
GAAAGAGCTTACTTGGTAGTGGGGAGCTCTTTCTGCATTATCTGTTTTAGCAGCTCTTATTTCT
ATTGAGTGCTCAACTAGTTCTTAAACATTAAAAGGATACTTATCCAGAAAGGTCAGTTGCCCCT
TACTTTTACTGACAGAACATAACAACCACTGATGATTTTATTTTATTTTAGTATTTTTCACCAA
ATAATACTAAAGATAATGTTCTTCACCTAGCATAACTTCCTCATGAAACTTTTGACTTAATACT
CCATCTGGTTGCAAAAACATGTTTCGGACATCTCTCAATTCAAACTTTGAAAATTGTAAACATC
AATATCATTTTAATTATTTAAAAAGGATGCAGGCAAACCATATGTATATATTTTGTTGGGCTTT
ACAGATGTATTAGTTGTAGAAGTTGTATTATGAAGATCATGTTGGTGTCCAACATGACATTTTT
TTTATGGTAGAGGTAATTATTAGATTTGTAGTGTACGTAACTCTATAATAGATAGTGTAATGTT
GATTTCTTTAGATTGTATCACCTGTGCACTATCATATAATGATGATGCTAAAAAGGTTCAGATT
CGCACGCAAATCTGTTTTGTGGTTAATGATGAAGTGATGGAAATTTGGTAAACCATAATAGACA
TACGAGCATACGACTATATGAGCTGTTGTATTGTATCATTAGATCAAAATTCCAACTTATGGTA
TGCTTTGGTGAAGTATCAATATTTTATTTCTGTTCCTTTTTGTTTTATTAGAACTGTACTTGTT
CTTTAGCAGTGATTTGAATAAAATTGCACACAGATGTTTTTTATTAGGACTAAGATTAGATAAG
ACATATGGAGTAGTTTGAATGGAGAAAGGTGGAGCAATGTTATGTTGTTTGAATAAGATGCAGC
CAGGCGCAATAGTAAAATTTCAGGAACAAAACAAGATGCAAACATAGGAAAGGTTTAAGAGGTC
AACATAAGTTGTTCCATGAAAAACTTCTCTTTAACAATGTATCATCTCCCTAGCTATGTATCTG
TACGTATGCTACTTTCTGTGCAATTTAGGGAGGGATTTTAGAAAGATTTTGCTTCCATTGACAA
ATCCAAAAACTGAACATATATATGGAACTCCATAAGGTTGAGTTCAAATTTGATTTTTCTGTAA
ACAAGATAGACATACATTTTCTTCTGATGTATGAGATTCCACTGTCTGTCCATCATACTGAAAG
AGCCTAGTGCTTACCACTCGGATAGCTTAAGGTTAGTAAATCAACAAAACATCAATGGAACTAG
AAGTTTGAGACAACAAAGCATTAGTGCAAAATTACAAATATTTTGAGATAATGGTCATGATTAC
AGATTTAAGATGCTCTATTGCATATCTTAATTTGTAACAAGTTTGGTGCTAAATATGTAGATCT
GTGATACTTCGTGTTGAATCTGTAGTTATGTCAAAATATATGTGGTTTTGCTAAATTTATCTTT
ATATTTATGTCATTCAAATGCAATCCCAAAGGTTATTCTTTCTCTTGACATCCGCAAAGAGAAC
TTGTTACTGGTTACTGGCTACTGGCTACTGGCTACTGAAAAGATTATCTTTCTTGTGGCTACTG
GCTACTAGCAAGCTAACTTGCAGCTAAAATTAATAGTTCCTGTGCACAGCTCTGTGTTCAGGGA
GATGAAGAAATATCAGAAGGACTTTTCGGGCTGGTGTGGTGAATGTAAACGTGAGAAGAAGGAG
AGGCAGATTCATGCTGTTAAAGCAACTAAGCTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR5083
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021