Detail information of BGIOSGA016665_circ_g.4


General Information
CircRNA Name BGIOSGA016665_circ_g.4
ID in PlantcircBase osi_circ_014492
Alias Chr04:25122231_25123902(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23072595-23074266  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016665
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016665_circ_g.3 BGIOSGA016665_circ_g.5 BGIOSGA016665_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016665-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTACAGTTCCTCTATGGAGATGATGGCATGGATCCTGCAAAGATGGAAGGGAAAGATGGAAAG
CCCTTAAATTTGGATCAATTGTTTATGAAAGTCATGggtctgtatgaatacacttcactggagg
aacagcccattgatcatgtctcagtgtggatctaaaggttctccaatcaacattagtcagatgg
ttgcatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCTGTATGAATACACTTCACTGGAGGAACAGCCCATTGATCATGTCTCAGTGTGGATCTAAA
GGTTCTCCAATCAACATTAGTCAGATGGTTGCATGTGTTGGCCAACAATCAGTTGGAGGGCGTC
GTGCCCCGAATGGCTTCATAGATCGAACTCTTCCCCACTTTCCTATAAATTCAAAGACTCCTGC
AGTAAGAACATCAGTACTAGAAATATGACTTGCTTATTTGTGTATCCATTTCTGGTGTTGGATA
TTTCTAGTTCTGTTCAAATAAGTACTCTTCAAATTTTATGGGGCACTATACATAGAGATAGAGG
CTGGAAATTGAAAATATATGTAATGTTTTATTTTAAACACAATATCTCTTATGTTATAGAAAGT
TCTGAATTGACATTACTTCCCTTTGATGTATATATATGTGGTATCCTAAATGGCTAATTAATTA
TTTATTTTTCATTAAAGGATCGTGGGATTCTATTGGAAGTTATCATGTAGAAAAATTGGTCCTT
TTCAGAGTGGGGATTTCATTGACTCGTAGTCCTCCACCTAGCTTTGTTAGAGAAAACATTTTTT
TATTCAACTTGTTCTGACTGCAATTTTGTTTGAATTAAATGTCACGAAATCAGCACATTTTGGT
ATATTCACATACAAATATGTTTTGTATTCCATTTCCAGGCCAAAGGCTTTGTCGCTAATTCTTT
CTATACTGGCTTGACTGCCACCGAATTCTTCTTCCATACGATGGGTGGGCGAGAAGGTCTTGTT
GATACAGCGGTATGTCTATGTATAAAACCATCTATTGTTTGCATAAGTTGATATTTGCACTCTA
TCTGTATTTCAGCACAAAAATTTCTTAAATTTGCTCACATAGACTTACACCGCAGTACATACTA
CTCAATTGAATTAATAGTAGTACAATGATGATATTATGTGAGAGGAATAGTCTGAATTAGCTCC
TTGTGCCTGGCAGGGATAGGATTAGGAAACTTAGCAGCTATTATAGAAGAGCACATCATCAACT
AGAAACAAATGATAAGTTCATTCATCACATTCTTATAGAATTAAGCCCACTTCTCCTTTATATT
TTGAGCACAGCAATGATTGGGGAAGATGTTTCCTTGTTCGTTGTTTGGGCACTAAATCAACTTG
CTTGCATACCAGAGTTGAATCTGGCGTTTCCGTTTGACTCTGCCTTTTCGGCTTTGGTCCTTGC
AGTTGAGTGTTTGATCTCAGGCACTGTAGTTCGCTGCATGAAAACCTTCACAGCACTATGCCAG
TTCTATGTAGAGGTCTGTTAGGTGAACTATACTGGTATCTTGTGCATTCAGCTGGACCAAGGTG
CAACCCATTGGGCATTTCCAGCATACTCATTGTGCCTTCTGGCTTCTCAAAAACATTTGGGAAT
TGTTGGAAATTTGGAATATAATTTCTGCTTGTTTCCTTGGTTGTGAACTTGTGATCGTAGGTTA
AAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTGGAAGATCTCTCAGTTTT
CTATGATCAGACGGTCCGCAATGCTAGTGGTGGTATTGTACAGTTCCTCTATGGAGATGATGGC
ATGGATCCTGCAAAGATGGAAGGGAAAGATGGAAAGCCCTTAAATTTGGATCAATTGTTTATGA
AAGTCATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021