Detail information of BGIOSGA016665_circ_g.5


General Information
CircRNA Name BGIOSGA016665_circ_g.5
ID in PlantcircBase osi_circ_005578
Alias 4:23072596|23075451
Organism Oryza sativa ssp. indica
Position chr4: 23072596-23075451  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016665
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016665_circ_g.3 BGIOSGA016665_circ_g.4 BGIOSGA016665_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016665-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATAAGCACACCTATTATCACTGCTGAGTTACTTTCTGAGAAGGATGTGTTGTCTGCACGCATT
GTGAAAGGCTCTATGGAAAAGGCAGTGCTGGGTGAGgtctgtatgaatacacttcactggagga
acagcccattgatcatgtctcagtgtggatctaaaggttctccaatcaacattagtcagatggt
tgcatgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCTGTATGAATACACTTCACTGGAGGAACAGCCCATTGATCATGTCTCAGTGTGGATCTAAAG
GTTCTCCAATCAACATTAGTCAGATGGTTGCATGTGTTGGCCAACAATCAGTTGGAGGGCGTCG
TGCCCCGAATGGCTTCATAGATCGAACTCTTCCCCACTTTCCTATAAATTCAAAGACTCCTGCA
GTAAGAACATCAGTACTAGAAATATGACTTGCTTATTTGTGTATCCATTTCTGGTGTTGGATAT
TTCTAGTTCTGTTCAAATAAGTACTCTTCAAATTTTATGGGGCACTATACATAGAGATAGAGGC
TGGAAATTGAAAATATATGTAATGTTTTATTTTAAACACAATATCTCTTATGTTATAGAAAGTT
CTGAATTGACATTACTTCCCTTTGATGTATATATATGTGGTATCCTAAATGGCTAATTAATTAT
TTATTTTTCATTAAAGGATCGTGGGATTCTATTGGAAGTTATCATGTAGAAAAATTGGTCCTTT
TCAGAGTGGGGATTTCATTGACTCGTAGTCCTCCACCTAGCTTTGTTAGAGAAAACATTTTTTT
ATTCAACTTGTTCTGACTGCAATTTTGTTTGAATTAAATGTCACGAAATCAGCACATTTTGGTA
TATTCACATACAAATATGTTTTGTATTCCATTTCCAGGCCAAAGGCTTTGTCGCTAATTCTTTC
TATACTGGCTTGACTGCCACCGAATTCTTCTTCCATACGATGGGTGGGCGAGAAGGTCTTGTTG
ATACAGCGGTATGTCTATGTATAAAACCATCTATTGTTTGCATAAGTTGATATTTGCACTCTAT
CTGTATTTCAGCACAAAAATTTCTTAAATTTGCTCACATAGACTTACACCGCAGTACATACTAC
TCAATTGAATTAATAGTAGTACAATGATGATATTATGTGAGAGGAATAGTCTGAATTAGCTCCT
TGTGCCTGGCAGGGATAGGATTAGGAAACTTAGCAGCTATTATAGAAGAGCACATCATCAACTA
GAAACAAATGATAAGTTCATTCATCACATTCTTATAGAATTAAGCCCACTTCTCCTTTATATTT
TGAGCACAGCAATGATTGGGGAAGATGTTTCCTTGTTCGTTGTTTGGGCACTAAATCAACTTGC
TTGCATACCAGAGTTGAATCTGGCGTTTCCGTTTGACTCTGCCTTTTCGGCTTTGGTCCTTGCA
GTTGAGTGTTTGATCTCAGGCACTGTAGTTCGCTGCATGAAAACCTTCACAGCACTATGCCAGT
TCTATGTAGAGGTCTGTTAGGTGAACTATACTGGTATCTTGTGCATTCAGCTGGACCAAGGTGC
AACCCATTGGGCATTTCCAGCATACTCATTGTGCCTTCTGGCTTCTCAAAAACATTTGGGAATT
GTTGGAAATTTGGAATATAATTTCTGCTTGTTTCCTTGGTTGTGAACTTGTGATCGTAGGTTAA
AACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTGGAAGATCTCTCAGTTTTC
TATGATCAGACGGTCCGCAATGCTAGTGGTGGTATTGTACAGTTCCTCTATGGAGATGATGGCA
TGGATCCTGCAAAGATGGAAGGGAAAGATGGAAAGCCCTTAAATTTGGATCAATTGTTTATGAA
AGTCATGGTCAGTTTTAACATGTAAAAACAGTTTGTTTACTTGATCAAGTGAGATGCGCCTCGT
GTGCTAACCATTTTACTTTTGTAGGCCACTTGTCCTCAAAGGGGACAGAATACATTATCTCCAG
GTGAAATCTTACAAATTTTAAATGACAAGCTCTCTGAACATGATGCCTCCTCTGATGATGGTTG
TAGCGAAAAGTTCAAGCAACTGTTAACGTATTTTCTTGAGGATCGTATAAAATTGCTGAAGAGC
ACAAGGAGAGCGCTTCTCCTAGATGAAGATCATGTTGGAGAGAGGCACTCCAGCTTTGAAGAAT
CCATTGCTGCTAATATTTCTGGTATATCTGTGAAGCAACTACAGGTGTGTCTATTCATATTTTT
CACATACCAATTCATCTCTGTTTTGCGAAAAACCTGAAATATCAAGCACAGTCTATTTCTGATC
AATTTTTTGGTCTCTTACTAATTGCGTGGTCATGCTAATTTTCTGCAGTAAATGTTAAACTGAT
TTCAAGTATTATTTTTATTGGTTTGCTTATGCATTTTATCCTTGTGTCGTCATTCTGTAATGGT
TTTCCTTTTCTCTATATGGCTCAGGTTTTCTTGGACACATGTTTATCTCGTTACCACTTGAAGA
AAATTGAAGCCGGAGCATCAATTGGGGCAATTGGGGCTCAAAGTATTGGAGAGCCTGGAACTCA
GATGACATTGAAAACTTTCCATTTTGCAGGAGTAGCTAGCATGAGTATCCTATATACTATATGG
TTCGTGAAAGTCTGCTTTTAATTTTAAGAATTACTAGCAGGTCGTTTTGGCCTATTTCCTATAA
TTTATTTACTTTAGAGGGGCACTGGAATGTAGTATCTAAGATAAAGCGGATGAAATTGTCAAGT
AATATGCGCTAGAAGATATAAGCTTTCATCAATCTGAATTGATTTGCACAATACTACGGCATTT
GATATCTTGATGTAGAGTAATGCATACATGCTATTCTTGGACACTGCTGTTCAAATCATCTTTC
CTTAACAAGTAAAAAGATGTTACTCTTGGTGTTCCTCGCATCAAGGAAATTATCAATGCTGCTA
AAAAGATAAGCACACCTATTATCACTGCTGAGTTACTTTCTGAGAAGGATGTGTTGTCTGCACG
CATTGTGAAAGGCTCTATGGAAAAGGCAGTGCTGGGTGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 23072634-23075428(-)
23072603-23075448(+)
Potential amino acid sequence MGCSSSEVYSYRPHPALPFP*(-)
MNTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAK
GFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASG
GIVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDA
SSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQV
FLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAA
KKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVCMNTLHWRNSPLIMSQCGSKGSPINISQ
MVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGL
VDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGKPLNL
DQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKS
TRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQS
IGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGS
MEKAVLGEVCMNTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHF
PINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVF
YDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQI
LNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANI
SGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV
PRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVCMNTLHWRNSPLIMSQCG
SKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEFF
FHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKM
EGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSEKFKQLLTYF
LEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAG
ASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSEKD
VLSARIVKGSMEKAVLGE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021