Detail information of BGIOSGA016665_circ_g.6


General Information
CircRNA Name BGIOSGA016665_circ_g.6
ID in PlantcircBase osi_circ_014493
Alias Chr04:25122908_25124662(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23073272-23075026  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2
Parent gene BGIOSGA016665
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016665_circ_g.3 BGIOSGA016665_circ_g.4 BGIOSGA016665_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA016665-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATTGGGGCTCAAAGTATTGGAGAGCCTGGAACTCAGATGACATTGAAAACTTTCCATTTTGC
AGGAGTAGCTAGCATGAGTATCCTATATACTATATGggccaaaggctttgtcgctaattctttc
tatactggcttgactgccaccgaattcttcttccatacgatgggtgggcgagaaggtcttgttg
atacagcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCCAAAGGCTTTGTCGCTAATTCTTTCTATACTGGCTTGACTGCCACCGAATTCTTCTTCCAT
ACGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCGGTATGTCTATGTATAAAACCATCTATTG
TTTGCATAAGTTGATATTTGCACTCTATCTGTATTTCAGCACAAAAATTTCTTAAATTTGCTCA
CATAGACTTACACCGCAGTACATACTACTCAATTGAATTAATAGTAGTACAATGATGATATTAT
GTGAGAGGAATAGTCTGAATTAGCTCCTTGTGCCTGGCAGGGATAGGATTAGGAAACTTAGCAG
CTATTATAGAAGAGCACATCATCAACTAGAAACAAATGATAAGTTCATTCATCACATTCTTATA
GAATTAAGCCCACTTCTCCTTTATATTTTGAGCACAGCAATGATTGGGGAAGATGTTTCCTTGT
TCGTTGTTTGGGCACTAAATCAACTTGCTTGCATACCAGAGTTGAATCTGGCGTTTCCGTTTGA
CTCTGCCTTTTCGGCTTTGGTCCTTGCAGTTGAGTGTTTGATCTCAGGCACTGTAGTTCGCTGC
ATGAAAACCTTCACAGCACTATGCCAGTTCTATGTAGAGGTCTGTTAGGTGAACTATACTGGTA
TCTTGTGCATTCAGCTGGACCAAGGTGCAACCCATTGGGCATTTCCAGCATACTCATTGTGCCT
TCTGGCTTCTCAAAAACATTTGGGAATTGTTGGAAATTTGGAATATAATTTCTGCTTGTTTCCT
TGGTTGTGAACTTGTGATCGTAGGTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAAT
GAAGGGATTGGAAGATCTCTCAGTTTTCTATGATCAGACGGTCCGCAATGCTAGTGGTGGTATT
GTACAGTTCCTCTATGGAGATGATGGCATGGATCCTGCAAAGATGGAAGGGAAAGATGGAAAGC
CCTTAAATTTGGATCAATTGTTTATGAAAGTCATGGTCAGTTTTAACATGTAAAAACAGTTTGT
TTACTTGATCAAGTGAGATGCGCCTCGTGTGCTAACCATTTTACTTTTGTAGGCCACTTGTCCT
CAAAGGGGACAGAATACATTATCTCCAGGTGAAATCTTACAAATTTTAAATGACAAGCTCTCTG
AACATGATGCCTCCTCTGATGATGGTTGTAGCGAAAAGTTCAAGCAACTGTTAACGTATTTTCT
TGAGGATCGTATAAAATTGCTGAAGAGCACAAGGAGAGCGCTTCTCCTAGATGAAGATCATGTT
GGAGAGAGGCACTCCAGCTTTGAAGAATCCATTGCTGCTAATATTTCTGGTATATCTGTGAAGC
AACTACAGGTGTGTCTATTCATATTTTTCACATACCAATTCATCTCTGTTTTGCGAAAAACCTG
AAATATCAAGCACAGTCTATTTCTGATCAATTTTTTGGTCTCTTACTAATTGCGTGGTCATGCT
AATTTTCTGCAGTAAATGTTAAACTGATTTCAAGTATTATTTTTATTGGTTTGCTTATGCATTT
TATCCTTGTGTCGTCATTCTGTAATGGTTTTCCTTTTCTCTATATGGCTCAGGTTTTCTTGGAC
ACATGTTTATCTCGTTACCACTTGAAGAAAATTGAAGCCGGAGCATCAATTGGGGCAATTGGGG
CTCAAAGTATTGGAGAGCCTGGAACTCAGATGACATTGAAAACTTTCCATTTTGCAGGAGTAGC
TAGCATGAGTATCCTATATACTATATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021