Detail information of Os05g0594700_circ_g.4


General Information
CircRNA Name Os05g0594700_circ_g.4
ID in PlantcircBase osa_circ_029222
Alias NA
Organism Oryza sativa
Position chr5: 29610291-29613639  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os05g0594700
Parent gene annotation Similar to Hv711N16.16 (Fragment). (Os05t0594700-01);Similar to
Hv711N16.16 (Fragment). (Os05t0594700-02)
Parent gene strand +
Alternative splicing Os05g0594700_circ_g.3 Os05g0594700_circ_g.5 Os05g0594700_circ_g.6 Os05g0594700_circ_g.7 Os05g0594700_circ_g.8 Os05g0594700_circ_g.9
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0594700-01:7
Os05t0594700-02:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATATTATATCTTCTTGTTCTTCAATGTATTTTTGGGAAGCATCGTTACAGGATCTGCTTTAGA
TCAGCTTAAGGCATACATTCATCAGTCGGCAAATGAgatcaagatattcgttccaatatcaatt
ttagcttcgcttgttctgttccctgtgaactggacaaatgacaccctagacagcatgaaggtag
tccacagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCCTGTGAACTGGACA
AATGACACCCTAGACAGCATGAAGGTAGTCCACAGTAAAATTGACAAACTTTCAATATCAAACA
TACCTTATGGGTCAAACAGGTAAGCCTCCATAAATCATTTGATATCTGGATGCGGTGTATTTTG
ATGAGTTGTGTAGAGATAAATGTTTCTTTTTTTGGTCTGGTTCAATATAAATTGTACGTAAAAC
ATCAATAAGATTGCCCATTGGTCCACCAATTACACAAACAAAATCTGTATAGTGATTCATTTTA
CATGCAGATTCAACCTTTTTAAGTTTTGGGCGGCACCTGAAATCCAACCACTTTTACTTATCTT
CATGCTGATTATGCACATGTACTTGGTACAATTTTTAGGAGCATTATCATCTTATGGTTTTGGG
TGATTTGATAAATATGCCACTTGCCTGTGTGACTGTCTAATTTAGTAAGGTACAAGCACTCTAT
TTTGGCCTGTGTGCTTGGGACTTAGCAGCTGCCCTGCCAAGTTCAATATTGGGTGGCAGTTGCT
CTGGTTGAAAATAAATTCATCCACACTGAACTTCTAGGTTTCATTTATTAATTTCTGTTGATGC
TAGCACATGTCTTTGCTGTTCATGATGAACATTCCATCTGTTTTACAGGTTTGTTACTCACTTG
GTTATGGCTTATGCTGTCACGTTTTGGACCTGCTATGTACTGTTCCGAGAGTATGAGATAATTA
CAACGATGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACAGTATGATC
TTGTCAACTTTGCAAATCCCCTCTCTATTTAGTACCAACATGTTTACATTGGATCCACAAGAAG
GGTAAAAAATTGTAATATTAATGGACTGAAACTATTCACCACTGGAAATAGTCTAAGAGATTGT
GGCTAAGCATTTTGTCTCTGAGCACCCTGATACTCACTTTGCACTGACTTGGTTTATATTATCT
AAAGCAATGTTGTAGACGGGAATGGTTTCATATCTCAATTGAATAAACACGATGAGTTAATTTC
CTTCTGGTTGGTTTGTTGAATGCACCTCAAATGATTTATTTTAGGTTCTTGTGCGGAATATACC
TCCAGATCCTGATGAATCAATTAGTGAGCTCGTGGAGCATTTCTTCCTTGTTAATCATCCTGAT
CATTATCTAAGACACCAGGTAATCTTTGGTAAAAATTTGTGGATAACTAAGTCAGATGTAGTTC
TGTTGCTTTTCTCTTCTGGGGGTTTCAACAGGTCATCATCTGCTTAGGTAGGAGCTGTGTTTCT
AGTTATGCTGATTGGCCTAATGCAAATAGATTTTTTTTCTACTCAACAGAACCCCCTTCATATA
TTATCCTTTTCCCACAAATTATTGATGGTTTCAAATGAACCTAATATTAATGTTTGCTAGTTTC
ATGTTGAGATTTTTTCCCCCAGATTCTGAGAATAGTCCACATAATAGCCTACCCACAGATTATT
TGGATATTAATACATAAATATTTTGGTTTTGCCAAGTAACAGGAAAGTTATGATCTCTTGGTTA
TCTAGATTTTCATTTAAATAATCATATTCATATGTTAAAGGGTCTAAAAACTGTCTCTCTGTGC
TAACACTTCACAGTGCTAATTGCTGAATGAGATTTAGAAGGGTCATATCCAAATTTGTGTATCA
TATGCACTTGGGTTTTCTACCCTGACTTCATTGATTTTTTTATTCTTCCTTATACTAATTACTG
TATTTATTCCGTCCTTTTTCTGGCCGATTGTCTATATCTATAGGTGGTTTACAATGCAAATAAA
CTTGCTGATCTGGTTGAGAAGAAGAAGAAACTGCAAAATTGGCTTGATTACTACCAGCTCAAGT
ATGAAAGAAATCCATCAAAAAGGCCCACCACTAAGGTTAGTCTGCCATATGGACCTTGATCAAT
TTATTTTTCATTTCAATTATAATATTACATTAGGATCTTTTTTCTTTTTAATTCTCTGTCCCCC
TGTTGGATTTTTGTTCCAGACTGGCTTTCTTGGCTGTTTTGGTTCCGAGGTGGATGCCATTGAA
TACTACAAAGCAGAGATTGAGAAGATTGGGAAAGAAGTAAGTTGTACTCCCTCCGTACCGTAAT
ATAAGGGATTTTGACTTTTTGCTTGCACTGTTTGACCACTCGTCTTATTCAAAAAATTTGTGCA
AATATAAAAAACGAAAAGTTGTGCTTAAAGTACTTTGGATAATAAAGCAAGTCACAAATAAAAT
AAATAATAATTCCAATTTTTTTTTAATAAGACGAGTGGCATTTTTGTCTATTAATTCCAAATAA
ATAATAATCCCTTATATTACGGGACGGAGGGAGTAGTATTTTTGTCTATATAATCATTGGACCA
TTCGGCATTGTCCATTTTTTCTGATTGAGTTGTATCATTCTATGAACATGGGTTTGCACAATCG
ATTCTTTTTTAGGATTAGTATTATGTCTAAGCATCACACATTCACACCTTGTGGGAGTTTAATT
TGTTTACAGCTAACAGTCAGATAACAATAAATTCATGTGTAACAACATGCAGGAAGCTGATGAG
CGTCAAAAGATCATGAAGGATCCCCAGTCAGCTGTTCCAGCAGCCTTTGTTTCATTTCGTTCAC
GGTGGGGGGCTGCTGTTTGTGCTCAGACACAGCAAACCAGTAATCCAACAGTCTGGATAACTGA
ATGGGCTCCAGAACCTCGTGATGTCTACTGGAATAATCTATCCATTCCATTTGTGTCCCTCACA
GTTAGGAGGCTGATAGTTGCTGTGGCATTCTTCTTCCTCAACTTTTTTTATGTCATTCCAATAG
CATTCGTGCAATCTCTTGCAAGCCTTGAAGGAATAGAAAAGGCGCTTCCATTTCTGAAACCCTT
AATCAAAATGTAAGTGTTTCTTCATGTGTTGATTATTTATACTATTATTGCATTTCCATGATTT
ATTCAGCGTGTAATTAATTTGGGTACATTAGACATATGGTTATCTTCTGCTATTCTTTTGAAAT
GCCCTGATAAATCTTGTTGACTATTGTGCAGTGATGTCATCAAATCATTCATCCAAGGTTTTCT
TCCAGGAATTGCTTTGAAGGTCTTCCTTATATTGCTTCCAACTATACTGATGTTTATGTCTAAG
TTTGAAGGATTAATATCACAGTCATCACTGGAGCGAAGATCTGCATCTAAATATTATATCTTCT
TGTTCTTCAATGTATTTTTGGGAAGCATCGTTACAGGATCTGCTTTAGATCAGCTTAAGGCATA
CATTCATCAGTCGGCAAATGA
Conservation Information
Conserved circRNAs osi_circ_015870
PMCS 0.127013064
Functional Information
Coding potential Y
Potential coding position 29610374-29613636(+)
29610421-29613627(-)
Potential amino acid sequence MKVVHSKIDKLSISNIPYGSNRFVTHLVMAYAVTFWTCYVLFREYEIITTMRLRFLASEKRRPD
QFTVLVRNIPPDPDESISELVEHFFLVNHPDHYLRHQVVYNANKLADLVEKKKKLQNWLDYYQL
KYERNPSKRPTTKTGFLGCFGSEVDAIEYYKAEIEKIGKEEADERQKIMKDPQSAVPAAFVSFR
SRWGAAVCAQTQQTSNPTVWITEWAPEPRDVYWNNLSIPFVSLTVRRLIVAVAFFFLNFFYVIP
IAFVQSLASLEGIEKALPFLKPLIKIDVIKSFIQGFLPGIALKVFLILLPTILMFMSKFEGLIS
QSSLERRSASKYYIFLFFNVFLGSIVTGSALDQLKAYIHQSANEIKIFVPISILASLVLFPVNW
TNDTLDSMKVVHSKIDKLSISNIPYGSNRFVTHLVMAYAVTFWTCYVLFREYEIITTMRLRFLA
SEKRRPDQFTVLVRNIPPDPDESISELVEHFFLVNHPDHYLRHQVVYNANKLADLVEKKKKLQN
WLDYYQLKYERNPSKRPTTKTGFLGCFGSEVDAIEYYKAEIEKIGKEEADERQKIMKDPQSAVP
AAFVSFRSRWGAAVCAQTQQTSNPTVWITEWAPEPRDVYWNNLSIPFVSLTVRRLIVAVAFFFL
NFFYVIPIAFVQSLASLEGIEKALPFLKPLIKIDVIKSFIQGFLPGIALKVFLILLPTILMFMS
KFEGLISQSSLERRSASKYYIFLFFNVFLGSIVTGSALDQLKAYIHQSANEIKIFVPISILASL
VLFPVNWTNDTLDSMKVVHSKIDKLSISNIPYGSNRFVTHLVMAYAVTFWTCYVLFREYEIITT
MRLRFLASEKRRPDQFTVLVRNIPPDPDESISELVEHFFLVNHPDHYLRHQVVYNANKLADLVE
KKKKLQNWLDYYQLKYERNPSKRPTTKTGFLGCFGSEVDAIEYYKAEIEKIGKEEADERQKIMK
DPQSAVPAAFVSFRSRWGAAVCAQTQQTSNPTVWITEWAPEPRDVYWNNLSIPFVSLTVRRLIV
AVAFFFLNFFYVIPIAFVQSLASLEGIEKALPFLKPLIKIDVIKSFIQGFLPGIALKVFLILLP
TILMFMSKFEGLISQSSLERRSASKYYIFLFFNVFLGSIVTGSALDQLKAYIHQSANEIKIFVP
ISILASLVLFPVNWTNDTLDSMKVVHSKIDKLSISNIPYGSNRFVTHLVMAYAVTFWTCYVLFR
EYEIITTMRLRFLASEKRRPDQFTVLVRNIPPDPDESISELVEHFFLVNHPDHYLRHQVVYNAN
KLADLVEKKKKLQNWLDYYQLKYERNPSKRPTTKTGFLGCFGSEVDAIEYYKAEIEKIGKEEAD
ERQKIMKDPQSAVPAAFVSFRSRWGAAVCAQTQQTSNPTVWITEWAPEPRDVYWNNLSIPFVSL
TVRRLIVAVAFFFLNFFYVIPIAFVQSLASLEGIEKALPFLKPLIKIDVIKSFIQGFLPGIALK
VFLILLPTILMFMSKFEGLISQSSLERRSASKYYIFLFFNVFLGSIVTGSALDQLKAYIHQSAN
(+)
MFDIESLSILLWTTFMLSRVSFVQFTGNRTSEAKIDIGTNILISFAD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017