Detail information of Os03g0107300_circ_g.22


General Information
CircRNA Name Os03g0107300_circ_g.22
ID in PlantcircBase osa_circ_017482
Alias Os_ciR1286
Organism Oryza sativa
Position chr3: 432712-432847  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os03g0107300
Parent gene annotation Anion transporter, Silicon efflux transporter, Arsenic species (
As) uptake (Os03t0107300-01)
Parent gene strand -
Alternative splicing Os03g0107300_circ_g.15 Os03g0107300_circ_g.16 Os03g0107300_circ_g.17 Os03g0107300_circ_g.18 Os03g0107300_circ_g.19 Os03g0107300_circ_g.20 Os03g0107300_circ_g.21
Support reads 9
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0107300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAGCTAGCAGATTATAGCTAGCTTAGCTACTTGAGCTGATGATCTCTCTCTGGTACGCGCGCA
GTAGgcaagctcactcatcttcttcttcttcgatcgaccaccacctagcaggtaattaagtgtc
tgatcgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAAGCTCACTCATCTTCTTCTTCTTCGATCGACCACCACCTAGCAGGTAATTAAGTGTCTGAT
CGAGCTAGCTAGCAGATTATAGCTAGCTTAGCTACTTGAGCTGATGATCTCTCTCTGGTACGCG
CGCAGTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.31343027
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015