Detail information of Os03g0107300_circ_g.16


General Information
CircRNA Name Os03g0107300_circ_g.16
ID in PlantcircBase osa_circ_017476
Alias NA
Organism Oryza sativa
Position chr3: 432604-432760  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method circseq_cup
Parent gene Os03g0107300
Parent gene annotation Anion transporter, Silicon efflux transporter, Arsenic species (
As) uptake (Os03t0107300-01)
Parent gene strand -
Alternative splicing Os03g0107300_circ_g.15 Os03g0107300_circ_g.17 Os03g0107300_circ_g.18 Os03g0107300_circ_g.19 Os03g0107300_circ_g.20 Os03g0107300_circ_g.21 Os03g0107300_circ_g.22
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   AA-GC
Number of exons covered Os03t0107300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGATCCAAGCGCCACCTTGGGCGCCGACGCAAGCTCACTCATCTTCTTCTTCTTCGATCGACC
ACCACCTAGCAGGTagcgaccccgccgtccgcccgatcggcaggaacggcaccgacgggaacac
cgccatcatccagaacaccgcgaacgcga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 157
Transcript exons: 432604-432760
AGCGACCCCGCCGTCCGCCCGATCGGCAGGAACGGCACCGACGGGAACACCGCCATCATCCAGA
ACACCGCGAACGCGATCGATCCAAGCGCCACCTTGGGCGCCGACGCAAGCTCACTCATCTTCTT
CTTCTTCGATCGACCACCACCTAGCAGGT

Genomic sequence AGCGACCCCGCCGTCCGCCCGATCGGCAGGAACGGCACCGACGGGAACACCGCCATCATCCAGA
ACACCGCGAACGCGATCGATCCAAGCGCCACCTTGGGCGCCGACGCAAGCTCACTCATCTTCTT
CTTCTTCGATCGACCACCACCTAGCAGGT
Conservation Information
Conserved circRNAs osi_circ_014058
PMCS 0.305205096
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016