Detail information of BGIOSGA014445_circ_g.2


General Information
CircRNA Name BGIOSGA014445_circ_g.2
ID in PlantcircBase osi_circ_005695
Alias 4:28840026|28840404
Organism Oryza sativa ssp. indica
Position chr4: 28840026-28840404  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014445
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014445_circ_g.1 BGIOSGA014445_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014445-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGGGGTCTTCTAAGCTCAAATGCAAGTTGTATTGCTTTTGCATAGTCATAATCTGATACTGC
ATTTTCTAATTCCTGACCTCTCAACAGTTCCTCCTCctccaggatatcagtgggaggcaagctc
ctcaatacccgaaaaagcacaaactgtgcaacatgacaaagcttaggttttgtgttccattccc
ggatatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCAGGATATCAGTGGGAGGCAAGCTCCTCAATACCCGAAAAAGCACAAACTGTGCAACATGA
CAAAGCTTAGGTTTTGTGTTCCATTCCCGGATATACTCAAGAAGTACGCGAAGCCCTTCCTTTG
GAAGACCAATAAGGGCTTTTTCTATTGGGTCCTCCAGATCAGACTCCCTGCACACTCATGTGAT
ATATCAATTTGTTATCAAAGAAAAACTAGTGAGCTTCAATAAAGGATTATGAGTACCTGCAAAG
CTGTGTGAATAACTCAAGAAGCCTGTGGGGTCTTCTAAGCTCAAATGCAAGTTGTATTGCTTTT
GCATAGTCATAATCTGATACTGCATTTTCTAATTCCTGACCTCTCAACAGTTCCTCCTC
Conservation Information
Conserved circRNAs osa_circ_025031*
PMCS
Functional Information
Coding potential Y
Potential coding position 28840327-28840096(+)
Potential amino acid sequence MQVVLLLHSHNLILHFLIPDLSTVPPPPGYQWEASSSIPEKAQTVQHDKA*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021