Detail information of Os04g0592700_circ_g.1


General Information
CircRNA Name Os04g0592700_circ_g.1
ID in PlantcircBase osa_circ_025031
Alias Os_ciR884
Organism Oryza sativa
Position chr4: 29982443-29982821  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, circseq_cup, find_circ
Parent gene Os04g0592700
Parent gene annotation WD40 repeat-like domain containing protein. (Os04t0592700-01)
Parent gene strand -
Alternative splicing Os04g0592700_circ_g.2
Support reads 29/2/5
Tissues root/root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0592700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    Yes
PCR primers for FL    F: AGGCAAGCTCCTCAATACCC
R: AGCTTGCCTCCCACTGATAT
Sequences
Splice junction sequence   TGTGGGGTCTTCTAAGCTCAAATGCAAGTTGTATTGCTTTTGCATAGTCATAATCTGATACTGC
ATTTTCTAATTCCTGACCTCTCAACAGTTCCTCCTCctccaggatatcagtgggaggcaagctc
ctcaatacccgaaaaagcacaaactgtgcaacatgacaaagcttaggttttgtgttccattccc
ggatatac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 154
Transcript exons: 29982443-29982523,29982749-29982821
CTCCAGGATATCAGTGGGAGGCAAGCTCCTCAATACCCGAAAAAGCACAAACTGTGCAACATGA
CAAAGCTTAGGTTTTGTGTTGTATTGCTTTTGCATAGTCATAATCTGATACTGCATTTTCTAAT
TCCTGACCTCTCAACAGTTCCTCCTC

Transcript length: 306
Transcript exons: 29982443-29982617,29982691-29982821
CTCCAGGATATCAGTGGGAGGCAAGCTCCTCAATACCCGAAAAAGCACAAACTGTGCAACATGA
CAAAGCTTAGGTTTTGTGTTCCATTCCCGGATATACTCAAGAAGTACGCGAAGCCCTTCCTTTG
GAAGACCAATAAGGGCTTTTTCTATTGGGTCCTCCAGATCAGACTCCCTGCAAAGCTGTGTGAA
TAACTCAAGAAGCCTGTGGGGTCTTCTAAGCTCAAATGCAAGTTGTATTGCTTTTGCATAGTCA
TAATCTGATACTGCATTTTCTAATTCCTGACCTCTCAACAGTTCCTCCTC

Genomic sequence CTCCAGGATATCAGTGGGAGGCAAGCTCCTCAATACCCGAAAAAGCACAAACTGTGCAACATGA
CAAAGCTTAGGTTTTGTGTTCCATTCCCGGATATACTCAAGAAGTACGCGAAGCCCTTCCTTTG
GAAGACCAATAAGGGCTTTTTCTATTGGGTCCTCCAGATCAGACTCCCTGCACACTCATGTGAT
ATATCAATTTGTTATCAAAGAAAAACTAGTGAGCTTCAATAAAGGATTATGAGTACCTGCAAAG
CTGTGTGAATAACTCAAGAAGCCTGTGGGGTCTTCTAAGCTCAAATGCAAGTTGTATTGCTTTT
GCATAGTCATAATCTGATACTGCATTTTCTAATTCCTGACCTCTCAACAGTTCCTCCTC
Conservation Information
Conserved circRNAs osi_circ_005695* osi_circ_014723
PMCS 0.563239226
Functional Information
Coding potential Y
Potential coding position 29982744-29982513(+)
Potential amino acid sequence MQVVLLLHSHNLILHFLIPDLSTVPPPPGYQWEASSSIPEKAQTVQHDKA*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA