Detail information of BGIOSGA014445_circ_g.3


General Information
CircRNA Name BGIOSGA014445_circ_g.3
ID in PlantcircBase osi_circ_014724
Alias Chr04:30700280_30701378(MH63RS2), Chr04:30733623_30734721(ZS97RS2), Chr04:30700280_30701378(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28840273-28841371  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA014445
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014445_circ_g.1 BGIOSGA014445_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014445-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGAGCAGATGAGACTATCATACCTTCCCATCATGCTTATCGAAAGTAGCAATGCATTCATTTG
TTTTGATGGTCCATAGCTTAACAAGGCCATCGCTTCcctgcaaagctgtgtgaataactcaaga
agcctgtggggtcttctaagctcaaatgcaagttgtattgcttttgcatagtcataatctgata
ctgcattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCAAAGCTGTGTGAATAACTCAAGAAGCCTGTGGGGTCTTCTAAGCTCAAATGCAAGTTGT
ATTGCTTTTGCATAGTCATAATCTGATACTGCATTTTCTAATTCCTGACCTCTCAACAGTTCCT
CCTCCTGCAACAATGGTGAATGTAATGAGTATTGCAAGTGTGGAAATTAAATAAAAATATTTCT
ATATAGATTCCAAGAGCCACCTTTGTAAAAGAAACAAGTGTAGCTGATCTGGAAATACAAGGGA
AAAGTCTAAACCCACAAAGATTGGTGGGCAGAAAAAAAAAAGATATTAATTACTAGATTGACAT
CAGTCATCAGACCATGTGTTCAACACAGTAACAGACACAAGTACATCTCTTATGTCTTTACAAG
AACTCAAGAAGCACTGCACTGAAAGTATAATAGAACACATCACTTACCTTTTTACGAAAATCTT
CCTGTTTATCTTCCATGGTACAGTCATGCCAAAGGTTAAGAACAGCATCAGTTCCGCCAGTAGC
AAGCATTTCAGTTTTCTTGCCAACAGCCAGTGCCCAAACCTGTTGAATGACTGAATCAATTGCC
AAGTCCATCTTAAACATGTACCAGAAAAGATCTCTTCCACATTGCCTATTAAATATTAATGATC
TCGATATTGCAAAGTTTTTGTCAGGTACTGAAATACATACTGAATAATTTCATAAACTACACGT
TCTTCCCAAAGAGGAATTTTAGAGCAAAAGAGGTCCCAATTTATCAGAAAAGGCAAGTTCATGG
CATAGCCAAAGTGAATGTTAGATTGTCAGAAAGCCATAAGCCATGAACAACAATGGCAACAGTT
TTCTGCTTGACTGAGCACAAATAGGTTCGTTCCTAATTCTATAAATATTGGTAAAAACTACAAT
AGATAGTGTTATAATTCTCAACTCAATGAAGAGATTGCACTATTGACATACTGGAATTGTGATA
ATAATAGGTTGATATACTGCTAGGGTTTTCAATGAAAAACAGAGCAGATGAGACTATCATACCT
TCCCATCATGCTTATCGAAAGTAGCAATGCATTCATTTGTTTTGATGGTCCATAGCTTAACAAG
GCCATCGCTTC
Conservation Information
Conserved circRNAs osa_circ_025032
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021