Plant Circular RNA Database

Detail information of Os02g0448400_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0448400_circ_g.2
					
						ID in PlantcircBase
						osa_circ_014563
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 14531337-14536109  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0448400						
					
						Parent gene annotation
						
							Similar to Synaptotagmin C. (Os02t0448400-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0448400_circ_g.1 Os02g0448400_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0448500-00:9
Os02t0448400-01:10
Os02t0448500-00:9

General Information
CircRNA Name	Os02g0448400_circ_g.2
ID in PlantcircBase	osa_circ_014563
Alias	NA
Organism	Oryza sativa
Position	chr2: 14531337-14536109 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0448400
Parent gene annotation	Similar to Synaptotagmin C. (Os02t0448400-01)
Parent gene strand	-
Alternative splicing	Os02g0448400_circ_g.1 Os02g0448400_circ_g.3
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0448500-00:9 Os02t0448400-01:10 Os02t0448500-00:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCCGGTCAAAGTCTGGATTCTTCACCCAATGAGGAACCTCAGGAAGCATGCTTTCTAGAGATTT
TGTATCAAGTTCAACAAGTGGCCTGATTACAGGGTCcttggaatgtataccgatgcttggtggt
ctgctaatgacttcaatttgcattttatcatttatgggtggttcctcgcagacaaactgaaatt
cttgctcc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1377
Transcript exons: 14531337-14531465,14531601-14531954,14532035-14532281,14
532373-14532449,14532792-14532866,14532939-14533040,1453
3184-14533302,14535643-14535766,14535846-14535896,145360
11-14536109
CTTGGAATGTATACCGATGCTTGGTGGTCTGCTAATGACTTCAATTTGCATTTTATCATTTATG
GGTGGTTCCTCGCAGACAAACTGAAATTCTTGCTCCCAACGTGGATCACGATTCTTCTTAATAT
GCTTGGTCTTCCTTTCTTCACCTCTAAACACAATTCTTACATATGGATTAGTGTGGTGCTTTCC
TTCAACGTCTTGTGCTTCATGAACGATAACTACCAGCAAACCACCACCTTCCGGTGTGCCATCA
GGGGCTTTTTCAATGGTGCCAGATTCATCACTTGTATCAACATCAGAATCACCTTCCTTGAAAG
GCTTATATGTTACATCAACAGTGAGCTGCCCCCGGAACTTGTCATTTGCTGGGTCATTAGCATC
CATAGTCTTGTGTAAGTCAAGTGTAAGTGACTTTGCCTCATCAGGAATAAGCTCTTTCAATGGG
ATAACACTCATTCCAATCTTGTCGTGCTTCCCAACCTGCTCCCAATCGTAAACAGTAAGCTCAA
GAGCCTGAGATTCTGGGTCTTTGACAACTAATTTGAAATCTTCATTCCATTCAGGGTTCAAGTT
GCTTCGCTTCACTGACGTTTTCTTTGATGGGAGTTTTTCCTCTGTTAGCTTTAACTTCACATAT
GGATCCGATTTTCCCAGAAAATCCTTTTTGGTGAGTTTGACAGCCCGTACGATGTTAACATGCA
AAATTCCAACAGGCTTCTTTTGTGCTTTTGCTGGATCCATGATTGGCACCTCAAGTACTTTTGG
CCACAAGTACATGTTTGCTACCTGAGTCTTGATAATCTCCTGAACAAATACATAGAGACCTGGA
ATTGCCATGAGATCTGCTCCTAAGAGTTTCAGACCAAAATCAACATGTGGCTTCTCCATAAGTG
AAACAACTATTTTAGCAAAACAAGGAAAGCTAGGCACCAAGGGCTTCAACGTTATGCGTGGTAG
AGCAAAAACATGCAAATCAATAACCTGTGCAGTTGCTTTTAGCCCAAATGCTTTGACAACAACA
GTGATATTCGGATTTCCAGCCCACTTGATGGAAGGTTCCATTATAAGTTCTTGCTCATCTGTGG
TGTAGACCTTCATCCCTTGAAATGTTGGTGGTAATGAACCTAATGTTAATGTCTCAAATTCAAC
CGAATCAATCTTATACTTGGCAGTGTTCTCAGCAATAATTGGCTTAGCGATTTCCTTTGCAGTT
TTACATATTGCCTTGTCAAGATAAGGCCAAATGTTTTCGACAAACTTGTTAAGCCAATCAATCC
GGTCAAAGTCTGGATTCTTCACCCAATGAGGAACCTCAGGAAGCATGCTTTCTAGAGATTTTGT
ATCAAGTTCAACAAGTGGCCTGATTACAGGGTC
						
					

						Genomic sequence
						
							CTTGGAATGTATACCGATGCTTGGTGGTCTGCTAATGACTTCAATTTGCATTTTATCATTTATG
GGTGGTTCCTCGCAGACAAACTGAAATTCTTGCTCCCAACGTGGATCACGATTCTTCTTAATAT
GCTGCATAAACAGTATTACAAGATCAAACATTATATTTTATAATGTAGTGACTAAAACTACCCA
TTGATTTCAAAATTTCCTACAGTAAATGTTATTGGTGAAAGTTTATTACACATTTAAACCTGTT
TTTCATACCTTGGTCTTCCTTTCTTCACCTCTAAACACAATTCTTACATATGGATTAGTGTGGT
GCTTTCCTTCAACGTCTTGTGCTTCATGAACGATAACTACCAGCAAACCACCACCTTCCGGTGT
GCCATCAGGGGCTTTTTCAATGGTGCCAGATTCATCACTTGTATCAACATCAGAATCACCTTCC
TTGAAAGGCTTATATGTTACATCAACAGTGAGCTGCCCCCGGAACTTGTCATTTGCTGGGTCAT
TAGCATCCATAGTCTTGTGTAAGTCAAGTGTAAGTGACTTTGCCTCATCAGGAATAAGCTCTTT
CAATGGGATAACACTCATTCCAATCTTGTCGTGCTTCCCAACCTGATAAGAAAATTTTATGTAG
GATTGAAAGCATCTGGATTAAACAGCTCAGGAGGATATTTAAAATTATTAACCATTACCTGCTC
CCAATCGTAAACAGTAAGCTCAAGAGCCTGAGATTCTGGGTCTTTGACAACTAATTTGAAATCT
TCATTCCATTCAGGGTTCAAGTTGCTTCGCTTCACTGACGTTTTCTTTGATGGGAGTTTTTCCT
CTGTTAGCTTTAACTTCACATATGGATCCGATTTTCCCAGAAAATCCTTTTTGGTGAGTTTGAC
AGCCCGTACGATGTTAACATGCAAAATTCCAACAGGCTTCTTTTGTGCTCTTCAATTCAATGTT
ATAAAAAGAAGATACCAAATTAGCAACCAGAAGGACATGCCTTGCAAAATAGTAGATAGATTAT
AGCATGCATTACTTTGCTGGATCCATGATTGGCACCTCAAGTACTTTTGGCCACAAGTACATGT
TTGCTACCTGAGTCTTGATAATCTCCTGCAAGGTAGGGAAAAGTCAACAGTTGCCGACATGTCA
CCATCAACATTTGTGAAGAAAAAACGCCACAGATTAAGTTAGAGTAGACAGGTGAAAATTTAGG
CTAAAATGTAGTAGTGGAATAATCAAAGAAAACCGGATGAATAGGCACTTAAGCAGAAAACTGC
GAGTGGTTTAGTGGAGTTTATGTTCTACTTAATCTTTCTCTTATAAGGGATACGTCAAATCATT
CATTATTCTATAATTCATGAACACCAGAAATGCAATTGAGATAAATGAAATATAACCCTATGGG
ATATATCAGTATATCCTAAATATTTGATGATATGGAAACTATGTTACCTGAACAAATACATAGA
GACCTGGAATTGCCATGAGATCTGCTCCTAAGAGTTTCAGACCAAAATCAACATGTGGCTGCAA
AGAAGAATACAAGCATTGACGATTCCATCAGTAATTACCAGAATGAATATATGCTTGAGTGTTT
ACCTTCTCCATAAGTGAAACAACTATTTTAGCAAAACAAGGAAAGCTAGGCACCAAGGGCTTCA
ACGTTATGCGTGGTAGAGCAAAAACATGCAAATCAATAACCTACAATATTAGACATATAATACT
GGATCAATATAACTTTTGAATAGAATTATAAGTCTGCAAATTAGCCTAATCCCATCAGGACGGA
ATCAAAAAAATATATATTTCCTTTAATTTTCACACTTTCTCTTAAATGGTTGTACCTGTGCAGT
TGCTTTTAGCCCAAATGCTTTGACAACAACAGTGATATTCGGATTTCCAGCCCACTTGATGGAA
GGTTCCATTATAAGTTCTTGCTCATCTGTGGTGTAGACCTTCATCCCTATATGGAAAGTTACGG
AAATGCGATATCATCTCATCATATACAAAAACACATCAGTCAGACACAATAACATCATCTAGGT
GCTTAAGAGAAATATTTAGAATTAGGTAGAATTAGGTAATGCAGAGCAGAGTTATGTACTCTGA
AATTATTGTGTATTTCAGGTAATGCGGAACTATCATAGTGGAAACATGCTGGTACAGATAGTAA
ACCTTGAATTCATATGTAGCACCATATGTTCATGCGCTTGACTTAGCGAGTAGTAATGAGATAA
GTTCATATAGATACTACAACACAATGGCATATATTCATACAGAGCTTAGTACTTATCGTAAATT
TTGTTTCACAATGGTAAATGAACTGTCAGATGGCTTGTTGGTTTGCATCTGATCCGAGGGAGGA
GAGCAGGAGGTCATGATTACCCGGCTAGCACCGTTTGTTTAGATTGCTCACATGGGAAGCGTTG
GGACATTTCGCGTTGGGGTCTGGCACATGAGTTCATGGTCGACAACTCTGGGATAAATTGGGCC
TGGTCATTTGGGGCTAGCAGAATTCCAGATGAATACAGTACACTGAAGCAACGGTTGGTAGAAC
AGTGAAACCATTTCAGGCTTCGTATATGGCTGGTTATACTATTTACCATTTCCAGGTGATTAGG
TCGGTATAAATCAAAACAAGCGTCAATTGGTCAGGAATCTCTGTGTCATTTGCACTCCTATCAT
CACACGACCAATGTACAACTTAAGAGTCTACCTGGCAGATTTACAAAATCATTGTCACCCAATT
TGGCCTAACATAATCTTAGGGGCAATTATATAAGCAGATTTATATAAGCTGATGGTAGGATCAA
GTGGATAACATATCTTGCTATAGATTTATATGAGAAGCTAAAAGCCCATTTCAGCATAGAACCT
TAAGCCACATTGTAGATTTGAAGAATTGCATGTTCAAAAACTTACAAGTCAAGTGTCCAACGAA
AGTATACATAACATTTTGGGTGGTATATTCGATAAGTGGATCTACTTGGCTTATCTATACTCCT
TATAAAAGGGAGTAGTGGTGGTGGTGGTTCTTCCACCACCCCAACTACCAACTCCCAACTTTTT
TAAGAAAAGAAAATGATATGTGGGGCTAGAGGGGCCACATCTCAACTACTCCCACCAACTCTCT
ACTTTTCGTGGGAAGGAAAAAGGATTTATGCGGGACTAAAAAGGTCCACATGTGATTAACAAAT
ATGTTCAACAATTAAGAGATATTAATAACATGTTAATGATAATTTTCTTTGATTAAAATTCCGT
TGCAACGCACAGGCAATATGCTAGTATGCTATAACTCCGCTAACATACATTTTTTCTTTTTAAG
CTAGGTCGAAGAGAGCTTTATCACAAAAGTGCTTAATTGGCACCATAATCCTGCACGTTTCTCA
TTGACGCGGAAATGAGTGTTCAAACTTCAAATAGGTTTACCTGGATTGGATGCCTAAGTTAAGC
TAGGCAGTTACTTTATTTTTGGTTTCATTTTATTAGTGATTATTGATAATCCAAATCCAGATAG
AAGCCTGAGTGCTTGAGCAAGAGTAGGGCCAATAACATGAGTTTGTTAGGAACATAAGTGGGCT
GGGCTGGCTCCGTCGCTTCCAAAGCCTAGCCCGAGAGGAGAGGAACTACAAAACAACAGAGTAT
GCACTTCTAGGGGGAGATCGATCGAGCAATCGGCGAATGGCGAACGGTGGCGGCGACCTGGTGG
CCGGTTGGCACCTTGTCGATCTTCTTCCTCCCTACCTTCCTTCTTCCTCTTCCTTCCAGAAGTT
TCTGGCATCTTCCACCAGTTGAATTCCCTTAGTTCATCCTCCTCTCCACCTCTATTTACTGGAG
TTTGGTTGCTATTGCACTGGATGCTTGCATATTTGAGTGGAATTGAGATTGGAAGTCTCGGTTG
CTAACAGAGTTGTAAGACTGGAATGTACACCTAAACAACTTGCTGTTGCTAGGTATACTCACAT
TTGGCACATAAGCTATAAATTCAATAAAGTAACTTTAAAAATAATATAAACTAAGTGTAACTGG
CCCTTTGGGCCATACTCTTTCTATTCTGACAAAGGACTATGTAGTTTCATAACTGACTCTTCAA
CAAAAATGTGATATTTCACATAAAGTTCATAAATATAGTTGTTTCAATTAGCCGTGGATCTGAA
TCTTCCATGGTTACTTGATCAAATTAGTTAGGCATTCTTAGCATGAAAAGTCTTTTTACGATGT
AGCAACTTTTGGCTAAAAAGTACTTCTGTGTAATTAAATTGATCCAAAATGTCTGCAACTAAGA
TATAAGAGTAGAACTAACCTTGAAATGTTGGTGGTAATGAACCTAATGTTAATGTCTCAAATTC
AACCGAATCAATCTTATACTTGGCAGTGTTCTCAGCAATAATTGGCTTAGCGATTTCCTTTGCA
GTTTTACATATTGCCTGTAAAAGACAATATTTACAAAACAGTGCCAAATAAAAACTTGGACAAA
TAATATTGCACTAGCTTGTATGAGCCAACCTTGTCAAGATAAGGCCAAATGTTTTCGACAAACT
TGTTAAGCCAATCAATCTTCATAAACAAAAAGTTAAAATCAGTAACGTTAGACTATAGGCCTAT
TAAAATAGAAACTTAAGATGGCATGACAAAATATAAGCTTCACGTTCACCCAAAGAGTAAGCAT
ACCCGGTCAAAGTCTGGATTCTTCACCCAATGAGGAACCTCAGGAAGCATGCTTTCTAGAGATT
TTGTATCAAGTTCAACAAGTGGCCTGATTACAGGGTC
						
					

			
		

Sequences
Splice junction sequence	CCCGGTCAAAGTCTGGATTCTTCACCCAATGAGGAACCTCAGGAAGCATGCTTTCTAGAGATTT TGTATCAAGTTCAACAAGTGGCCTGATTACAGGGTCcttggaatgtataccgatgcttggtggt ctgctaatgacttcaatttgcattttatcatttatgggtggttcctcgcagacaaactgaaatt cttgctcc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1377 Transcript exons: 14531337-14531465,14531601-14531954,14532035-14532281,14 532373-14532449,14532792-14532866,14532939-14533040,1453 3184-14533302,14535643-14535766,14535846-14535896,145360 11-14536109 CTTGGAATGTATACCGATGCTTGGTGGTCTGCTAATGACTTCAATTTGCATTTTATCATTTATG GGTGGTTCCTCGCAGACAAACTGAAATTCTTGCTCCCAACGTGGATCACGATTCTTCTTAATAT GCTTGGTCTTCCTTTCTTCACCTCTAAACACAATTCTTACATATGGATTAGTGTGGTGCTTTCC TTCAACGTCTTGTGCTTCATGAACGATAACTACCAGCAAACCACCACCTTCCGGTGTGCCATCA GGGGCTTTTTCAATGGTGCCAGATTCATCACTTGTATCAACATCAGAATCACCTTCCTTGAAAG GCTTATATGTTACATCAACAGTGAGCTGCCCCCGGAACTTGTCATTTGCTGGGTCATTAGCATC CATAGTCTTGTGTAAGTCAAGTGTAAGTGACTTTGCCTCATCAGGAATAAGCTCTTTCAATGGG ATAACACTCATTCCAATCTTGTCGTGCTTCCCAACCTGCTCCCAATCGTAAACAGTAAGCTCAA GAGCCTGAGATTCTGGGTCTTTGACAACTAATTTGAAATCTTCATTCCATTCAGGGTTCAAGTT GCTTCGCTTCACTGACGTTTTCTTTGATGGGAGTTTTTCCTCTGTTAGCTTTAACTTCACATAT GGATCCGATTTTCCCAGAAAATCCTTTTTGGTGAGTTTGACAGCCCGTACGATGTTAACATGCA AAATTCCAACAGGCTTCTTTTGTGCTTTTGCTGGATCCATGATTGGCACCTCAAGTACTTTTGG CCACAAGTACATGTTTGCTACCTGAGTCTTGATAATCTCCTGAACAAATACATAGAGACCTGGA ATTGCCATGAGATCTGCTCCTAAGAGTTTCAGACCAAAATCAACATGTGGCTTCTCCATAAGTG AAACAACTATTTTAGCAAAACAAGGAAAGCTAGGCACCAAGGGCTTCAACGTTATGCGTGGTAG AGCAAAAACATGCAAATCAATAACCTGTGCAGTTGCTTTTAGCCCAAATGCTTTGACAACAACA GTGATATTCGGATTTCCAGCCCACTTGATGGAAGGTTCCATTATAAGTTCTTGCTCATCTGTGG TGTAGACCTTCATCCCTTGAAATGTTGGTGGTAATGAACCTAATGTTAATGTCTCAAATTCAAC CGAATCAATCTTATACTTGGCAGTGTTCTCAGCAATAATTGGCTTAGCGATTTCCTTTGCAGTT TTACATATTGCCTTGTCAAGATAAGGCCAAATGTTTTCGACAAACTTGTTAAGCCAATCAATCC GGTCAAAGTCTGGATTCTTCACCCAATGAGGAACCTCAGGAAGCATGCTTTCTAGAGATTTTGT ATCAAGTTCAACAAGTGGCCTGATTACAGGGTC
Genomic sequence	CTTGGAATGTATACCGATGCTTGGTGGTCTGCTAATGACTTCAATTTGCATTTTATCATTTATG GGTGGTTCCTCGCAGACAAACTGAAATTCTTGCTCCCAACGTGGATCACGATTCTTCTTAATAT GCTGCATAAACAGTATTACAAGATCAAACATTATATTTTATAATGTAGTGACTAAAACTACCCA TTGATTTCAAAATTTCCTACAGTAAATGTTATTGGTGAAAGTTTATTACACATTTAAACCTGTT TTTCATACCTTGGTCTTCCTTTCTTCACCTCTAAACACAATTCTTACATATGGATTAGTGTGGT GCTTTCCTTCAACGTCTTGTGCTTCATGAACGATAACTACCAGCAAACCACCACCTTCCGGTGT GCCATCAGGGGCTTTTTCAATGGTGCCAGATTCATCACTTGTATCAACATCAGAATCACCTTCC TTGAAAGGCTTATATGTTACATCAACAGTGAGCTGCCCCCGGAACTTGTCATTTGCTGGGTCAT TAGCATCCATAGTCTTGTGTAAGTCAAGTGTAAGTGACTTTGCCTCATCAGGAATAAGCTCTTT CAATGGGATAACACTCATTCCAATCTTGTCGTGCTTCCCAACCTGATAAGAAAATTTTATGTAG GATTGAAAGCATCTGGATTAAACAGCTCAGGAGGATATTTAAAATTATTAACCATTACCTGCTC CCAATCGTAAACAGTAAGCTCAAGAGCCTGAGATTCTGGGTCTTTGACAACTAATTTGAAATCT TCATTCCATTCAGGGTTCAAGTTGCTTCGCTTCACTGACGTTTTCTTTGATGGGAGTTTTTCCT CTGTTAGCTTTAACTTCACATATGGATCCGATTTTCCCAGAAAATCCTTTTTGGTGAGTTTGAC AGCCCGTACGATGTTAACATGCAAAATTCCAACAGGCTTCTTTTGTGCTCTTCAATTCAATGTT ATAAAAAGAAGATACCAAATTAGCAACCAGAAGGACATGCCTTGCAAAATAGTAGATAGATTAT AGCATGCATTACTTTGCTGGATCCATGATTGGCACCTCAAGTACTTTTGGCCACAAGTACATGT TTGCTACCTGAGTCTTGATAATCTCCTGCAAGGTAGGGAAAAGTCAACAGTTGCCGACATGTCA CCATCAACATTTGTGAAGAAAAAACGCCACAGATTAAGTTAGAGTAGACAGGTGAAAATTTAGG CTAAAATGTAGTAGTGGAATAATCAAAGAAAACCGGATGAATAGGCACTTAAGCAGAAAACTGC GAGTGGTTTAGTGGAGTTTATGTTCTACTTAATCTTTCTCTTATAAGGGATACGTCAAATCATT CATTATTCTATAATTCATGAACACCAGAAATGCAATTGAGATAAATGAAATATAACCCTATGGG ATATATCAGTATATCCTAAATATTTGATGATATGGAAACTATGTTACCTGAACAAATACATAGA GACCTGGAATTGCCATGAGATCTGCTCCTAAGAGTTTCAGACCAAAATCAACATGTGGCTGCAA AGAAGAATACAAGCATTGACGATTCCATCAGTAATTACCAGAATGAATATATGCTTGAGTGTTT ACCTTCTCCATAAGTGAAACAACTATTTTAGCAAAACAAGGAAAGCTAGGCACCAAGGGCTTCA ACGTTATGCGTGGTAGAGCAAAAACATGCAAATCAATAACCTACAATATTAGACATATAATACT GGATCAATATAACTTTTGAATAGAATTATAAGTCTGCAAATTAGCCTAATCCCATCAGGACGGA ATCAAAAAAATATATATTTCCTTTAATTTTCACACTTTCTCTTAAATGGTTGTACCTGTGCAGT TGCTTTTAGCCCAAATGCTTTGACAACAACAGTGATATTCGGATTTCCAGCCCACTTGATGGAA GGTTCCATTATAAGTTCTTGCTCATCTGTGGTGTAGACCTTCATCCCTATATGGAAAGTTACGG AAATGCGATATCATCTCATCATATACAAAAACACATCAGTCAGACACAATAACATCATCTAGGT GCTTAAGAGAAATATTTAGAATTAGGTAGAATTAGGTAATGCAGAGCAGAGTTATGTACTCTGA AATTATTGTGTATTTCAGGTAATGCGGAACTATCATAGTGGAAACATGCTGGTACAGATAGTAA ACCTTGAATTCATATGTAGCACCATATGTTCATGCGCTTGACTTAGCGAGTAGTAATGAGATAA GTTCATATAGATACTACAACACAATGGCATATATTCATACAGAGCTTAGTACTTATCGTAAATT TTGTTTCACAATGGTAAATGAACTGTCAGATGGCTTGTTGGTTTGCATCTGATCCGAGGGAGGA GAGCAGGAGGTCATGATTACCCGGCTAGCACCGTTTGTTTAGATTGCTCACATGGGAAGCGTTG GGACATTTCGCGTTGGGGTCTGGCACATGAGTTCATGGTCGACAACTCTGGGATAAATTGGGCC TGGTCATTTGGGGCTAGCAGAATTCCAGATGAATACAGTACACTGAAGCAACGGTTGGTAGAAC AGTGAAACCATTTCAGGCTTCGTATATGGCTGGTTATACTATTTACCATTTCCAGGTGATTAGG TCGGTATAAATCAAAACAAGCGTCAATTGGTCAGGAATCTCTGTGTCATTTGCACTCCTATCAT CACACGACCAATGTACAACTTAAGAGTCTACCTGGCAGATTTACAAAATCATTGTCACCCAATT TGGCCTAACATAATCTTAGGGGCAATTATATAAGCAGATTTATATAAGCTGATGGTAGGATCAA GTGGATAACATATCTTGCTATAGATTTATATGAGAAGCTAAAAGCCCATTTCAGCATAGAACCT TAAGCCACATTGTAGATTTGAAGAATTGCATGTTCAAAAACTTACAAGTCAAGTGTCCAACGAA AGTATACATAACATTTTGGGTGGTATATTCGATAAGTGGATCTACTTGGCTTATCTATACTCCT TATAAAAGGGAGTAGTGGTGGTGGTGGTTCTTCCACCACCCCAACTACCAACTCCCAACTTTTT TAAGAAAAGAAAATGATATGTGGGGCTAGAGGGGCCACATCTCAACTACTCCCACCAACTCTCT ACTTTTCGTGGGAAGGAAAAAGGATTTATGCGGGACTAAAAAGGTCCACATGTGATTAACAAAT ATGTTCAACAATTAAGAGATATTAATAACATGTTAATGATAATTTTCTTTGATTAAAATTCCGT TGCAACGCACAGGCAATATGCTAGTATGCTATAACTCCGCTAACATACATTTTTTCTTTTTAAG CTAGGTCGAAGAGAGCTTTATCACAAAAGTGCTTAATTGGCACCATAATCCTGCACGTTTCTCA TTGACGCGGAAATGAGTGTTCAAACTTCAAATAGGTTTACCTGGATTGGATGCCTAAGTTAAGC TAGGCAGTTACTTTATTTTTGGTTTCATTTTATTAGTGATTATTGATAATCCAAATCCAGATAG AAGCCTGAGTGCTTGAGCAAGAGTAGGGCCAATAACATGAGTTTGTTAGGAACATAAGTGGGCT GGGCTGGCTCCGTCGCTTCCAAAGCCTAGCCCGAGAGGAGAGGAACTACAAAACAACAGAGTAT GCACTTCTAGGGGGAGATCGATCGAGCAATCGGCGAATGGCGAACGGTGGCGGCGACCTGGTGG CCGGTTGGCACCTTGTCGATCTTCTTCCTCCCTACCTTCCTTCTTCCTCTTCCTTCCAGAAGTT TCTGGCATCTTCCACCAGTTGAATTCCCTTAGTTCATCCTCCTCTCCACCTCTATTTACTGGAG TTTGGTTGCTATTGCACTGGATGCTTGCATATTTGAGTGGAATTGAGATTGGAAGTCTCGGTTG CTAACAGAGTTGTAAGACTGGAATGTACACCTAAACAACTTGCTGTTGCTAGGTATACTCACAT TTGGCACATAAGCTATAAATTCAATAAAGTAACTTTAAAAATAATATAAACTAAGTGTAACTGG CCCTTTGGGCCATACTCTTTCTATTCTGACAAAGGACTATGTAGTTTCATAACTGACTCTTCAA CAAAAATGTGATATTTCACATAAAGTTCATAAATATAGTTGTTTCAATTAGCCGTGGATCTGAA TCTTCCATGGTTACTTGATCAAATTAGTTAGGCATTCTTAGCATGAAAAGTCTTTTTACGATGT AGCAACTTTTGGCTAAAAAGTACTTCTGTGTAATTAAATTGATCCAAAATGTCTGCAACTAAGA TATAAGAGTAGAACTAACCTTGAAATGTTGGTGGTAATGAACCTAATGTTAATGTCTCAAATTC AACCGAATCAATCTTATACTTGGCAGTGTTCTCAGCAATAATTGGCTTAGCGATTTCCTTTGCA GTTTTACATATTGCCTGTAAAAGACAATATTTACAAAACAGTGCCAAATAAAAACTTGGACAAA TAATATTGCACTAGCTTGTATGAGCCAACCTTGTCAAGATAAGGCCAAATGTTTTCGACAAACT TGTTAAGCCAATCAATCTTCATAAACAAAAAGTTAAAATCAGTAACGTTAGACTATAGGCCTAT TAAAATAGAAACTTAAGATGGCATGACAAAATATAAGCTTCACGTTCACCCAAAGAGTAAGCAT ACCCGGTCAAAGTCTGGATTCTTCACCCAATGAGGAACCTCAGGAAGCATGCTTTCTAGAGATT TTGTATCAAGTTCAACAAGTGGCCTGATTACAGGGTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_011647 						
					
						PMCS
						0.20318334

Conservation Information
Conserved circRNAs	osi_circ_011647
PMCS	0.20318334

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							14536058-14531421(+)
14536060-14531339(-)
14531397-14536102(-)
						
					

						Potential amino acid sequence
						
							MLSRDFVSSSTSGLITGSLECIPMLGGLLMTSICILSFMGGSSQTN*(+)
MLPEVPHWVKNPDFDRIDWLNKFVENIWPYLDKAICKTAKEIAKPIIAENTAKYKIDSVEFETL
TLGSLPPTFQGMKVYTTDEQELIMEPSIKWAGNPNITVVVKAFGLKATAQVIDLHVFALPRITL
KPLVPSFPCFAKIVVSLMEKPHVDFGLKLLGADLMAIPGLYVFVQEIIKTQVANMYLWPKVLEV
PIMDPAKAQKKPVGILHVNIVRAVKLTKKDFLGKSDPYVKLKLTEEKLPSKKTSVKRSNLNPEW
NEDFKLVVKDPESQALELTVYDWEQVGKHDKIGMSVIPLKELIPDEAKSLTLDLHKTMDANDPA
NDKFRGQLTVDVTYKPFKEGDSDVDTSDESGTIEKAPDGTPEGGGLLVVIVHEAQDVEGKHHTN
PYVRIVFRGEERKTKHIKKNRDPRWEQEFQFVCEEPPINDKMQIEVISRPPSIGIHSKDPVIRP
LVELDTKSLESMLPEVPHWVKNPDFDRIDWLNKFVENIWPYLDKAICKTAKEIAKPIIAENTAK
YKIDSVEFETLTLGSLPPTFQGMKVYTTDEQELIMEPSIKWAGNPNITVVVKAFGLKATAQVID
LHVFALPRITLKPLVPSFPCFAKIVVSLMEKPHVDFGLKLLGADLMAIPGLYVFVQEIIKTQVA
NMYLWPKVLEVPIMDPAKAQKKPVGILHVNIVRAVKLTKKDFLGKSDPYVKLKLTEEKLPSKKT
SVKRSNLNPEWNEDFKLVVKDPESQALELTVYDWEQVGKHDKIGMSVIPLKELIPDEAKSLTLD
LHKTMDANDPANDKFRGQLTVDVTYKPFKEGDSDVDTSDESGTIEKAPDGTPEGGGLLVVIVHE
AQDVEGKHHTNPYVRIVFRGEERKTKHIKKNRDPRWEQEFQFVCEEPPINDKMQIEVISRPPSI
GIHSKDPVIRPLVELDTKSLESMLPEVPHWVKNPDFDRIDWLNKFVENIWPYLDKAICKTAKEI
AKPIIAENTAKYKIDSVEFETLTLGSLPPTFQGMKVYTTDEQELIMEPSIKWAGNPNITVVVKA
FGLKATAQVIDLHVFALPRITLKPLVPSFPCFAKIVVSLMEKPHVDFGLKLLGADLMAIPGLYV
FVQEIIKTQVANMYLWPKVLEVPIMDPAKAQKKPVGILHVNIVRAVKLTKKDFLGKSDPYVKLK
LTEEKLPSKKTSVKRSNLNPEWNEDFKLVVKDPESQALELTVYDWEQVGKHDKIGMSVIPLKEL
IPDEAKSLTLDLHKTMDANDPANDKFRGQLTVDVTYKPFKEGDSDVDTSDESGTIEKAPDGTPE
GGGLLVVIVHEAQDVEGKHHTNPYVRIVFRGEERKTKHIKKNRDPRWEQEFQFVCEEPPINDKM
QIEVISRPPSIGIHSKDPVIRPLVELDTKSLESMLPEVPHWVKNPDFDRIDWLNKFVENIWPYL
DKAICKTAKEIAKPIIAENTAKYKIDSVEFETLTLGSLPPTFQGMKVYTTDEQELIMEPSIKWA
GNPNITVVVKAFGLKATAQVIDLHVFALPRITLKPLVPSFPCFAKIVVSLMEKPHVDFGLKLLG
ADLMAIPGLYVFVQEIIKTQVANMYLWPKVLEVPIMDPAKAQKKPVGILHVNIVRAVKLTKKDF
LGKSDPYVKLKLTEEKLPSKKTSVKRSNLNPEWNEDFKLVVKDPESQALELTVYDWEQVGKHDK
IGMSVIPLKELIPDEAKSLTLDLHKTMDANDPANDKFRGQLTVDVTYKPFKEGDSDVDTSDESG
TIEKAPDGTPEGGGLLVVIVHEAQDVEGKHHTNPYVRIVFRGEERKTKHIKKNRDPRWEQEFQF
VCEEPPINDKMQIEVISRPPSIGIHSK(-)
MIKCKLKSLADHQASVYIPRTL*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	14536058-14531421(+) 14536060-14531339(-) 14531397-14536102(-)
Potential amino acid sequence	MLSRDFVSSSTSGLITGSLECIPMLGGLLMTSICILSFMGGSSQTN(+) MLPEVPHWVKNPDFDRIDWLNKFVENIWPYLDKAICKTAKEIAKPIIAENTAKYKIDSVEFETL TLGSLPPTFQGMKVYTTDEQELIMEPSIKWAGNPNITVVVKAFGLKATAQVIDLHVFALPRITL KPLVPSFPCFAKIVVSLMEKPHVDFGLKLLGADLMAIPGLYVFVQEIIKTQVANMYLWPKVLEV PIMDPAKAQKKPVGILHVNIVRAVKLTKKDFLGKSDPYVKLKLTEEKLPSKKTSVKRSNLNPEW NEDFKLVVKDPESQALELTVYDWEQVGKHDKIGMSVIPLKELIPDEAKSLTLDLHKTMDANDPA NDKFRGQLTVDVTYKPFKEGDSDVDTSDESGTIEKAPDGTPEGGGLLVVIVHEAQDVEGKHHTN PYVRIVFRGEERKTKHIKKNRDPRWEQEFQFVCEEPPINDKMQIEVISRPPSIGIHSKDPVIRP LVELDTKSLESMLPEVPHWVKNPDFDRIDWLNKFVENIWPYLDKAICKTAKEIAKPIIAENTAK YKIDSVEFETLTLGSLPPTFQGMKVYTTDEQELIMEPSIKWAGNPNITVVVKAFGLKATAQVID LHVFALPRITLKPLVPSFPCFAKIVVSLMEKPHVDFGLKLLGADLMAIPGLYVFVQEIIKTQVA NMYLWPKVLEVPIMDPAKAQKKPVGILHVNIVRAVKLTKKDFLGKSDPYVKLKLTEEKLPSKKT SVKRSNLNPEWNEDFKLVVKDPESQALELTVYDWEQVGKHDKIGMSVIPLKELIPDEAKSLTLD LHKTMDANDPANDKFRGQLTVDVTYKPFKEGDSDVDTSDESGTIEKAPDGTPEGGGLLVVIVHE AQDVEGKHHTNPYVRIVFRGEERKTKHIKKNRDPRWEQEFQFVCEEPPINDKMQIEVISRPPSI GIHSKDPVIRPLVELDTKSLESMLPEVPHWVKNPDFDRIDWLNKFVENIWPYLDKAICKTAKEI AKPIIAENTAKYKIDSVEFETLTLGSLPPTFQGMKVYTTDEQELIMEPSIKWAGNPNITVVVKA FGLKATAQVIDLHVFALPRITLKPLVPSFPCFAKIVVSLMEKPHVDFGLKLLGADLMAIPGLYV FVQEIIKTQVANMYLWPKVLEVPIMDPAKAQKKPVGILHVNIVRAVKLTKKDFLGKSDPYVKLK LTEEKLPSKKTSVKRSNLNPEWNEDFKLVVKDPESQALELTVYDWEQVGKHDKIGMSVIPLKEL IPDEAKSLTLDLHKTMDANDPANDKFRGQLTVDVTYKPFKEGDSDVDTSDESGTIEKAPDGTPE GGGLLVVIVHEAQDVEGKHHTNPYVRIVFRGEERKTKHIKKNRDPRWEQEFQFVCEEPPINDKM QIEVISRPPSIGIHSKDPVIRPLVELDTKSLESMLPEVPHWVKNPDFDRIDWLNKFVENIWPYL DKAICKTAKEIAKPIIAENTAKYKIDSVEFETLTLGSLPPTFQGMKVYTTDEQELIMEPSIKWA GNPNITVVVKAFGLKATAQVIDLHVFALPRITLKPLVPSFPCFAKIVVSLMEKPHVDFGLKLLG ADLMAIPGLYVFVQEIIKTQVANMYLWPKVLEVPIMDPAKAQKKPVGILHVNIVRAVKLTKKDF LGKSDPYVKLKLTEEKLPSKKTSVKRSNLNPEWNEDFKLVVKDPESQALELTVYDWEQVGKHDK IGMSVIPLKELIPDEAKSLTLDLHKTMDANDPANDKFRGQLTVDVTYKPFKEGDSDVDTSDESG TIEKAPDGTPEGGGLLVVIVHEAQDVEGKHHTNPYVRIVFRGEERKTKHIKKNRDPRWEQEFQF VCEEPPINDKMQIEVISRPPSIGIHSK(-) MIKCKLKSLADHQASVYIPRTL(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0448400_circ_g.2

Address

Any questions?

Supported by