Detail information of BGIOSGA006546_circ_g.3


General Information
CircRNA Name BGIOSGA006546_circ_g.3
ID in PlantcircBase osi_circ_011647
Alias Chr02:14707683_14712459(MH63RS2), Chr02:15101557_15106334(ZS97RS2), Chr02:14707683_14712459(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 15452561-15457338  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA006546
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA006546_circ_g.1 BGIOSGA006546_circ_g.2 BGIOSGA006546_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA006546-TA:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCGGTCAAAGTCTGGATTCTTCACCCAATGAGGAACCTCAGGAAGCATGCTTTCTAGAGATTT
TGTATCAAGTTCAACAAGTGGCCTGATTACAGGGTCccttggaatgtataccgatgcttggtgg
tctgctaatgacttcaatttgcattttatcatttatgggtggttcctcgcagacaaactgaaat
tcttgctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGGAATGTATACCGATGCTTGGTGGTCTGCTAATGACTTCAATTTGCATTTTATCATTTAT
GGGTGGTTCCTCGCAGACAAACTGAAATTCTTGCTCCCAACGTGGATCACGATTCTTCTTAATA
TGCTGCATAAACAGTATTACAAGATCAAACATTATATTTTATAATGTAGTGACTAAAACTACCC
ATTGATTTCAAAATTTCCTACAGTAAATGTTATTGGTGAAAGTTTATTACACATTTAAACCTGT
TTTTCATACCTTGGTCTTCCTTTCTTCACCTCTAAACACAATTCTTACATATGGATTAGTGTGG
TGCTTTCCTTCAACGTCTTGTGCTTCATGAACGATAACTACCAGCAAACCACCACCTTCCGGTG
TGCCATCAGGGGCTTTTTCAATGGTGCCAGATTCATCACTTGTATCAACATCAGAATCACCTTC
CTTGAAAGGCTTATATGTTACATCAACAGTGAGCTGCCCCCGGAACTTGTCATTTGCTGGGTCA
TTAGCATCCATAGTCTTGTGTAAGTCAAGTGTAAGTGACTTTGCCTCATCAGGAATAAGCTCTT
TCAATGGGATAACACTCATTCCAATCTTGTCGTGCTTCCCAACCTGATAAGAAAATTTTATGTA
GGATTGAAAGCATCTGGATTAAACAGCTCAGGAGGATATTTAAAATTATTAACCATTACCTGCT
CCCAATCGTAAACAGTAAGCTCAAGAGCCTGAGATTCTGGGTCTTTGACAACTAATTTGAAATC
TTCATTCCATTCAGGGTTCAAGTTGCTTCGCTTCACTGACGTTTTCTTTGATGGGAGTTTTTCC
TCTGTTAGCTTTAACTTCACATATGGATCTGATTTTCCCAGAAAATCCTTTTTGGTGAGTTTGA
CAGCCCGTACGATGTTAACATGCAAAATTCCAACAGGCTTCTTTTGTGCTCTTCAATTCAATGT
TATAAAAAGAAGATACCAAATTAGCAACCAGAAGGACATGCCTTGCAAAATAGTAGATAGATTA
TAGCATGCATTACTTTGCTGGATCCATGATTGGCACCTCAAGTACTTTTGGCCACAAGTACATG
TTTGCTACCTGAGTCTTGATAATCTCCTGCAAGGTAGGGAAAAGTCAACAGTTGCCGACATGTC
ACCATCAACATTTGTGAAGAAAAAACGCCACAGATTAAGTTAGAGTAGACAGGTGAAAATTTAG
GCTAAAATGTAGTAGTGGAATAATCAAAGAAAACCGGATGAATAGGCACTTAAGCAGAAAACTG
CGAGTGGTTTAGTGGAGTTTATGTTCTACTTAATCTTTCTCTTATAAGGGATACATCAAATCAT
TCATTATTCTATAATTCATGAACACCAGAAATGCAATTGAGATAAATGAAATATAACCCTATGG
GATATATCAGTATATCCTAAATATTTGATGATATGGAAACTATGTTACCTGAACAAATACATAG
AGACCTGGAATTGCCATGAGATCTGCTCCTAAGAGTTTCAGACCAAAATCAACATGTGGCTGCA
AAGAAGAATACAAGCATTGACGATTCCATCAGTAATTACCAGAATGAATATATGCTTGAGTGTT
TACCTTCTCCATAAGTGAAACAACTATTTTAGCAAAACAAGGAAAGCTAGGCACCAAGGGCTTC
AACGTTATGCGTGGTAGAGCAAAAACATGCAAATCAATAACCTACAATATTAGACATATAATAC
TGGATCAATATAACTTTTGAATAGAATTATAAGTCTGCAAATTAGCCTAATCCCATCAGGACGG
AATCAAAAAAATATATATTTCCTTTAATTTTCACACTTTCTCTTAAATGGTTGTACCTGTGCAG
TTGCTTTTAGCCCAAATGCTTTGACAACAACAGTGATATTCGGATTTCCAGCCCACTTGATGGA
AGGTTCCATTATAAGTTCTTGCTCATCTGTGGTGTAGACCTTCATCCCTATATGGAAAGTTACG
GAAATGCGATATCATCTCATCATATACAAAAACACATCAGTCAGACACAATAACATCATCTAGG
TGCTTAAGAGAAATATTTAGAATTAGGTAGAATTAGGTAATGCAGAGCAGAGTTATGTACTCTG
AAATTATTGTGTATTTCAGGTAATGCGGAACTATCATAGTGGAAACATGCTGGTACAGATAGTA
AACCTTGAATTCATATGTAGCACCATATGTTCATGCGCTTGACTTAGCGAGTAGTAATGAGATA
AGATAAGTTCATATAGATACTACAACACAATGGCATATATTCATACAGAGCTTAGTACTTATCG
TAAATTTTGTTTCACAATGGTAAATGAACTGTCAGATGGCTTGTTGGTTTGCATCTGATCCGAG
GGAGGAGAGCAGGAGGTCATGATTACCCGGCTAGCACCGTTTGTTTAGATTGCTCACATGGGAA
GCGTTGGGACATTTCGCGTTGGGGTCTGGCACATGAGTTCATGGTCGACAACTCTGGGATAAAT
TGGGCCTGGTCATTTGGGGCTAGCAGAATTCCAGATGAATACAGTACACTGAAGCAACGGTTGG
TAGAACAGTGAAACCATTTCAGGCTTCGTATATGGCTGGTTATACTATTTACCATTTCCAGGTG
ATTAGGTCGGTATAAATCAAAACAAGCGTCAATTGGTCAGGAATCTCTGTGTCATTTGCACTCC
TATCATCACACGACCAATGTACAACTTAAGAGTCTACCTGGCAGATTTACAAAATCATTGTCAC
CCAATTTGGCCTAACATAATCTTAGGGGCAATTATATAAGCAGATTTATATAAGCTGATGGTAG
GATCAAGTGGATAACATATCTTGCTATAGATTTATATGAGAAGCTAAAAGCCCATTTCAGCATA
GAACCTTAAGCCACATTGTAGATTTGAAGAATTGCATGTTCAAAAACTTACAAGTCAAGTGTCC
AACGAAAGTATACATAACATTTTGGGTGGTATATTCGATAAGTGGATCTACTTGGCTTATCTAT
ACTCCTTATAAAAGGGAGTAGTGGTGGTGGTGGTTCTTCCACCACCCCAACTACCAACTCCCAA
CTTTTTTAAGAAAAGAAAATGATATGTGGGGCTAGAGGGCCCACATCTCAACTACTCCCACCAA
CTCTCTACTTTTCGTGGGAAGGAAAAAGGATTTATGCGGGACTAAAAAGGTCCACATGTGATTA
ACAAATATGTTCAACAATTAAGAGATATTAATAACATGTTAATGATAATTTTCTTTGATTAAAA
TTCCGTTGCAATGCACGGGCAATATGCTAGTATGCTATAACTCCGCTAACATACATTTTTGCTT
TTTAAGCTAGGTCGAAGAGAGCTTTATCACAAAAGTGCTTAATTGGCACCATAATCCTGCACGT
TTCTCATTGACGCGGAAATGAGTGTTCAAACTTCAAATAGGTTTACCTGGATTGGATGCCTAAG
TTAAGCTAGGCAGTTACTTTATTTTTGGTTTCTTTTATTAGTGATTATTGATAATCCAAATCCA
GATAGAAGCCTGAGTGCTTGAGCAAGAGTAGGGCCAATAACATGAGTTTGTTAGGAACATAAGT
GGGCTGGGCTGGCTCCGTCGCATCCAAAGCCTAGCCCGAGAGGAGAGGAACTACAAAACAACAG
AGTATGCACTTCTAGGGGGAGATCGATCGAGCAATCGGCGAATGGCGAACGGTGGCGGCGACCT
GGTGGCCGGTTGGCACCTTGTCGATCTTCTTCCTCCCTACCTTCCTTCTTCCTCTTCCTTCCAG
AAGTTTCTGGCATCTTCCACCAGTTGAATTCCCTTAGTTCATCCTCCTCTCCACCTCTATTTAC
TGGAGTTTGGTTGCTATTGCACTGGATGCTTGCATATTTGAGTGGAATTGAGATTGGAAGTCTC
GGTTGCTAACAGAGTTGTAAGACTGGAATGTACACCTAAACAACTTGCTGTTGCTAGGTATACT
CACATTTGGCACATAAGCTATAAATTCAATAAAGTAACTTTAAAAATAATATAAACTAAGTGTA
ACTGGCCCTTTGGGCCATACTCTTTCTATTCTGACAAAGGACTATGTAGTTTCATAACTGACTC
TTCAACAAAAATGTGATATTTCACATAAAGTTCATAAATATAGTTGTTTCAATTAGCCGTGGAT
CTGAATCTTCCATGGTTACTTGATCAAATTAGTTAGGCATTCTTAGCATGAAAAGTCTTTTTAC
GATGTAGCAACTTTTGGCTAAAAAGTACTTCTGTGTAATTAAATTGATCCAAAATGTCTGCAAC
TAAGATATAAGAGTAGAACTAACCTTGAAATGTTGGTGGTAATGAACCTAATGTTAATGTCTCA
AATTCAACCGAATCAATCTTATACTTGGCAGTGTTCTCAGCAATAATTGGCTTAGCGATTTCCT
TTGCAGTTTTACATATTGCCTGTAAAAGACAATATTTACAAAACAGTGCCAAATAAAAACTTGG
ACAAATAATATTGCACTAGCTTGTATGAGCCAACCTTGTCAAGATAAGGCCAAATGTTTTCGAC
AAACTTGTTAAGCCAATCAATCTTCATAAACAAAAAGTTAAAATCAGTAACGTTAGACTATAGG
CCTATTAAAATAGAAACTTAAGATGGCATGACAAAATATAAGCTTCACGTTCACCCAAAGAGTA
AGCATACCCGGTCAAAGTCTGGATTCTTCACCCAATGAGGAACCTCAGGAAGCATGCTTTCTAG
AGATTTTGTATCAAGTTCAACAAGTGGCCTGATTACAGGGTC
Conservation Information
Conserved circRNAs osa_circ_014563
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021