Detail information of Os01g0834200_circ_g.11


General Information
CircRNA Name Os01g0834200_circ_g.11
ID in PlantcircBase osa_circ_004729
Alias Os_ciR915
Organism Oryza sativa
Position chr1: 35740480-35741129  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, PcircRNA_finder, find_circ
Parent gene Os01g0834200
Parent gene annotation Similar to T-cell immune regulator 1 transcript variant 3 (Fragm
ent). (Os01t0834200-01);Similar to VHA-A1 (VACUOLAR PROTON ATPAS
E A 1); ATPase. (Os01t0834200-02);Similar to T-cell immune regul
ator 1 transcript variant 3 (Fragment). (Os01t0834200-03);Simila
r to VHA-A1 (VACUOLAR PROTON ATPASE A 1); ATPase. (Os01t0834200-
04)
Parent gene strand +
Alternative splicing Os01g0834200_circ_g.2 Os01g0834200_circ_g.3 Os01g0834200_circ_g.4 Os01g0834200_circ_g.5 Os01g0834200_circ_g.6 Os01g0834200_circ_g.7 Os01g0834200_circ_g.8 Os01g0834200_circ_g.9 Os01g0834200_circ_g.10
Support reads 25/5
Tissues root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0834200-04:3
Os01t0834200-01:3
Os01t0834200-03:3
Os01t0834200-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTACTCTCCGTTCAGATACTTTTGTTGCTTATGGCTATTGTAGCTGTTCCGTGGATGCTCTTC
CCAAAGCCTTTTATCTTGAAGAAACTTCACAAGGAGtgatgcacatactgctgggctcattaaa
gtccgtgatccctatccttttggagtggacccaagttggcgtggaagtcgatctgagctaccct
ttctaaac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 161
Transcript exons: 35740480-35740564,35741054-35741129
TGATGCACATACTGCTGGGCTCATTAAAGTCCGTGATCCCTATCCTTTTGGAGTGGACCCAAGT
TGGCGTGGAAGTCGATCTGAGGTTGCTTATGGCTATTGTAGCTGTTCCGTGGATGCTCTTCCCA
AAGCCTTTTATCTTGAAGAAACTTCACAAGGAG

Transcript length: 475
Transcript exons: 35740480-35740686,35740780-35740963,35741046-35741129
TGATGCACATACTGCTGGGCTCATTAAAGTCCGTGATCCCTATCCTTTTGGAGTGGACCCAAGT
TGGCGTGGAAGTCGATCTGAGCTACCCTTTCTAAACTCCTTGAAGATGAAGATGTCTATACTAA
TGGGTGTAACCCAGATGAACTTGGGGATTGTATTGAGTTATTTTGATGCAAAGTTTCATGGAAA
TGCTCTTGACATAAGGTATCAATTCATACCACAGATGATCTTTCTGAACAGCCTCTTTGGCTAC
TTAGCACTCCTAATTCTCATCAAGTGGTGCACGGGCTCTCAAGCTGACCTATATCATGTGATGA
TATATATGTTCCTTGATCCTTCTGGCAATCTTGGAGAAAATCAACTATTTTGGGGCCAGAAGGA
ACTTCAGATACTTTTGTTGCTTATGGCTATTGTAGCTGTTCCGTGGATGCTCTTCCCAAAGCCT
TTTATCTTGAAGAAACTTCACAAGGAG

Genomic sequence TGATGCACATACTGCTGGGCTCATTAAAGTCCGTGATCCCTATCCTTTTGGAGTGGACCCAAGT
TGGCGTGGAAGTCGATCTGAGCTACCCTTTCTAAACTCCTTGAAGATGAAGATGTCTATACTAA
TGGGTGTAACCCAGATGAACTTGGGGATTGTATTGAGTTATTTTGATGCAAAGTTTCATGGAAA
TGCTCTTGACATAAGGTGCTGTATTTTGTTTGCATAGTTTTCTTCTTTTGCTGCAAGTAATTGA
AGGGGAGGATAAGGGCGATCTTTTTAACTGTGTGAGTTCCTCAGGTATCAATTCATACCACAGA
TGATCTTTCTGAACAGCCTCTTTGGCTACTTAGCACTCCTAATTCTCATCAAGTGGTGCACGGG
CTCTCAAGCTGACCTATATCATGTGATGATATATATGTTCCTTGATCCTTCTGGCAATCTTGGA
GAAAATCAACTATTTTGGGGCCAGAAGGAACTTCAGGTTTGTATAACCTTTTATTAACAAGAAA
AAGGCTTCACTACCTCATTTTCCTGCCAGCTAACAATTATTACTCTCCGTTCAGATACTTTTGT
TGCTTATGGCTATTGTAGCTGTTCCGTGGATGCTCTTCCCAAAGCCTTTTATCTTGAAGAAACT
TCACAAGGAG
Conservation Information
Conserved circRNAs osi_circ_002516* osi_circ_010900
PMCS 0.594163462
Functional Information
Coding potential Y
Potential coding position 35740505-35740939(-)
Potential amino acid sequence MSPAVCASLLVKFLQDKRLWEEHPRNSYNSHKQQKYLKFLLAPK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017