Detail information of Os01g0834200_circ_g.9


General Information
CircRNA Name Os01g0834200_circ_g.9
ID in PlantcircBase osa_circ_004727
Alias NA
Organism Oryza sativa
Position chr1: 35736718-35736880  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0834200
Parent gene annotation Similar to T-cell immune regulator 1 transcript variant 3 (Fragm
ent). (Os01t0834200-01);Similar to VHA-A1 (VACUOLAR PROTON ATPAS
E A 1); ATPase. (Os01t0834200-02);Similar to T-cell immune regul
ator 1 transcript variant 3 (Fragment). (Os01t0834200-03);Simila
r to VHA-A1 (VACUOLAR PROTON ATPASE A 1); ATPase. (Os01t0834200-
04)
Parent gene strand +
Alternative splicing Os01g0834200_circ_g.2 Os01g0834200_circ_g.3 Os01g0834200_circ_g.4 Os01g0834200_circ_g.5 Os01g0834200_circ_g.6 Os01g0834200_circ_g.7 Os01g0834200_circ_g.8 Os01g0834200_circ_g.10 Os01g0834200_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGTTATACTTATCTGACTTATTGTTCTCGTTATTTTGTGTCATAATGTTAATATGTTATCTGC
TGAGATATTATGTAGTAgtactttaatttgcatatttggcacacaaattcactgcttgatttga
ccgtgcttgttagaattttattggaagaagcttga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 163
Transcript exons: 35736718-35736880
GTACTTTAATTTGCATATTTGGCACACAAATTCACTGCTTGATTTGACCGTGCTTGTTAGAATT
TTATTGGAAGAAGCTTGAGTGTTATACTTATCTGACTTATTGTTCTCGTTATTTTGTGTCATAA
TGTTAATATGTTATCTGCTGAGATATTATGTAGTA

Genomic sequence GTACTTTAATTTGCATATTTGGCACACAAATTCACTGCTTGATTTGACCGTGCTTGTTAGAATT
TTATTGGAAGAAGCTTGAGTGTTATACTTATCTGACTTATTGTTCTCGTTATTTTGTGTCATAA
TGTTAATATGTTATCTGCTGAGATATTATGTAGTA
Conservation Information
Conserved circRNAs NA
PMCS 0.208139059
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017