Detail information of Zm00001d038849_circ_g.7


General Information
CircRNA Name Zm00001d038849_circ_g.7
ID in PlantcircBase zma_circ_002408
Alias circ2044
Organism Zea mays
Position chr6: 165827007-165831692  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d038849
Parent gene annotation alpha/beta-Hydrolases superfamily protein
Parent gene strand +
Alternative splicing Zm00001d038849_circ_g.1 Zm00001d038849_circ_g.2 Zm00001d038849_circ_g.3 Zm00001d038849_circ_g.4 Zm00001d038849_circ_g.5 Zm00001d038849_circ_g.6
Support reads 4
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d038849_T004:3
Zm00001d038849_T002:3
Zm00001d038849_T003:3
Zm00001d038849_T001:3
Zm00001d038849_T005:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCCGCTTTGCATTAGAGCGAGGTATGGAGGGACGCCTTGGGAAGAATTTCATGAGGAGAATAA
ACGAAGATGGATACATTGATGTGAAGAATAAAAAAGggatgacagcatcttggttgaccttgct
gatgccatcacaaaggaaggaattagtgcttttcggtttgatttttctggaaatgggtaagcca
ttgtagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATGACAGCATCTTGGTTGACCTTGCTGATGCCATCACAAAGGAAGGAATTAGTGCTTTTCGG
TTTGATTTTTCTGGAAATGGGTAAGCCATTGTAGCACCTTGGTGACCATGGCACATATGAGATC
ATGATATCAAATGTCATGGGGACTTCTAATTTTAGCATTGAGTTAAAAATGTTTCCATGCCATT
TATAACATGTGAGCAAGTAGTTACAGCCTACGGTCATCATTCACCAATTGAATGTATATTCCCT
TCATCCTGAGAACCACATTGAATTTTTCTTTCAGTTTATACTTATGTGTCCTCTTTCTCCTTTA
AAGGGAAAGTGATGGTGAATTCCAGTATGGAAGCTACAGAAAAGAGGCAGCTGATTTGCGCTCT
GTAGTATTACATTTCTCAGAACAGAAATATGACATAATTGCTCTTATCGGGCATAGCAAAGGTA
GGAAAGCTACTGTTTATATGGATTAAGTTCTCCTTTTATGTTGATGCCTATCATGCACAGTATA
TGCACAGAAACTTGCATTAACATGCAAAATTAGCATCAAAAGTTGGTAGGGATGCAAACTTGAA
CTACTACTTTCTGAGTTTGTTGCTTAGGGTCAAGATAAGTTGAGGAACATTCACTATAACTGAA
AGCAATCACTTTAGTAGTTTAGTTTTTTATACCTGACATGCATATAACTTCTGATTTCTGCTTC
ATTTTTTGTGTGTACGCAAATCATATGGCAGGTGATCATGATAGTAGACAGTGGCCTTTTTTCT
CTAATGAGGCAGGAGAACTGTGTATCATTTCATTAAGAAGGAAAAAATACAAGGAGAGGCTAGA
GGGCCAGCTCTGTAGATGTATAGTTGCAGGCGAGCCACATAAATTAGAAAAAACTGACCTCCAC
CACACACATCCTGACCTAATTGTCAAGGATAATGTGACCTGACGAGTAACTCGTAGAGGGCTGA
AACACCACAAGCTATTCTCATTCACCGCCAACTGTAACATACCCTCATCGTTGCGGTGTTCCCA
TATCTCCCAAACCACCAGATGACCATAATGACGAGGGAGTTGATGCCTTTTTTCAAATCCTTGG
GCACACTTCTGACTGCACTATTCCACTAATTAGAGACGTGCCTTGCATCAAGCTGAGGGGCAAG
TCCTGCCAAACCCATTTTTTGGAGGATGAGCAACCAAACTTGTCTTATGAAGACATGAGAGACC
AGGATATGCTGGATTGTCTCTTCTTGGTCACAAACGGGACATAGTGCGATGTTTTTTTTTTTCT
CGAATATGCAGGAGAGTTGTATATCATTATATTTAAGAAGAAGAAAAAAGTTGGGCCGAAGCCC
TTACAAGCCATAACACTGAGGTTTAAACCCCTCAAAAACAGAAAAAAAAAAACAACCCTTGAAC
AGAAATTAGCCGTGAGGAAGATTAGCTGCTAGGAAAATAAGCCCCTTAGCCCCTGCCATCTCCC
ACAACCTTCGCTCTTCTCCAACCTGCTCCAGAACAGCAGCAACACTCGGATTGCCGCCCTCGAA
GACACACACTGATTACAGTGTTTCCATAAGGTTCATGCACCAAGCAAAACAAGGGAGTTAATCC
CCACCTTCATTTGTCCAGCTGCCATTTCACTTATTGTCCTCCACCAGTCCAGCAAACTATCATT
TTCTGGTTGAGGGGACAGAGTATGCAGTCCAAATTGTCTCAACAAAAGGAACCAGCACTCCCTT
GTGAAAACACAAGAGACCAGTAGATGGTCTATTGTTTCACTTTCTTGTTCACAAAGAGGGCAAC
TATCAGGGTGATCCAATCCTCTTTTTGCAAGACGATCAGCTGTCCAACACCTTTTTTGTGCAAC
TAACCACAGAAAAAACCGACATTTAGGAGGCGCCCAGGTTTTCTATATCCTCTCATACGGTTCA
AAAGGAAGCGAGCCAATGAAAACCCCCTCGTAGGCAGATTTCGCTGAATATTTTCCATTGGCAG
CCAGCCTAAAAATGTGCTTATCTTCAACATTCTGCCTTAATTCAGCAGTTAACAGTAAGTTCCA
GAGGTGCAGATAATCAACAATTGCCCCCACAGATAGGGCCCCTCGAATATCCGACATCCATGCT
CTTCCAGTTATAGCTTCTTGGTCTGTCCTTGTATTGATTTTTCTTTTCGGAACAACTTGAAGAA
GTCTTGGCGCAATATCTGCCACCCTCTGTCCTTGAATCCATTGATCCTTCCAAAAAAGAGTATT
AGCACCGTTCCCAACTTCCGTTTGCATCGCCATACTGAAGAAGGTCTGGACCTTGTCCAGAACT
TGGATAGTCAAGGATGACCAAGGTCGGTTAGGCTTCGTTTTTTGCAGCCATAACCAACGCATCC
GCAGCGCCCAACTCAGCTCCTTAATGCTTGAAATACCAAGACCACCCAAATCAAGAGGTCGACA
AACTTTGCTCCAAGAAACAAGGCAATGCCCCCCATTTATCTCTTTGCGACCTCTCCAAAGAAAG
CCTCTTCGGATTTTATCGATTGCTTTTGTGATATAAGTTGGGAGTTCAATTGCCATTGCTAAGT
AGATGAGCATCCCAGTAAGCACAAACCACACTTGAACTGTTCGCCCAGCCCTTGTCATCAAGTC
TGCCTTCCATCCAGGAAGCTGATTTGCAAATTTGTCGATAATTGGCTGCGTCTGTTCCTTGGTT
ATCTTCCGTAGTGTTAATGGAAGTCCAAGATATTTACAAGGGAAGGACGAAATTCCACATGATA
GCAAACTGTTGGAATACGAACCCATACCCCTAACCAGGGATGGGGAGCAGTATTAATAGGCTTA
GTAACTGGGCCAGGCCCATTACAGTGAGGGGTGAGACGGTAATTACATGGGGAACACCCCAAAC
CTTAGAATCCTAGACGGGTAGTCTAACACCCCCCCGCAGTCACAATTAGGTTTAGGTTTAGGTC
CTGTCAGCTACAGCCGCCAGGGGTGAGACGGTAATTACATGGGAAGCCCCTGGCGGCTGTCAGG
GGTGAGACGGTAATTACATGGGAAGCCCCTGGCGGCTGTAGCTGACAGGACCTAAACCTAAACC
TAATTGTGACTGCGGGGGGGTGTTAGACTTCTAGACATTACTATGCAGCCCGGAAGCCTCGCCG
AATAGGTGAAGAATATCCACTATGGTTGCTAGTTTTAGTTGGTCAATTGGATGCCCAACATATA
TTCTTGATTGCCAGCCAAATAAAGAATTTGCAGTTGAGTGGAGCCCAAGGTTTCCAAATCTGTT
TCCATGGCACACATTTGATGGAGCCAAAAAAAGTAAGCATTATAGTTCGACATAATAGTGCATG
ACCCTGGTGCCAAATTATCAGGCACATTTTGCTGAAGAGCCAAGTTATCCACCAAGTCCCTGTT
ATGGTCGCTAGATCGGTGAAGGATTGGAGAGGGGTATCGATGGGCAGGAACGTCGGCCGGGAGC
CTTTGCCCACGACCGAGCAAGAGGAGGGGTTCTCCCTTCTAATTCTTGTCTACTTTATTTCTCA
TCCATTGATTACATAAATAGGTCGGCTGACCGCCCCTGTCTAGCTAGAGATCCTTATATCCTTG
AAACTCTCCTAAAAACTCTCAACAAACTACATGATAACCTTCCTAGATAATCTCAACTAATCTT
CTAAATAATCTCAACTAATCTTCTAATCTTATCTCTAACTATCCTTATCTAATCCCTCTTGGAG
GGCCCATGGTTGCTGCTCCCGCAGCCCCTCCATGGGCCTCCTTAGGCCCTGACATCTAATCTCC
CTTGGAGGGCCCATGGTTGTTGCTGCCGCAGCCCTTAGCTCCGATACCAGATGTTATGGTCGCT
AGATCGGTGAGGGATTAGAGAGGGGTATCGATGGGCAGGAACGTCGGCCGGGGGCCTCTGCCCA
CAGCCGAGCAAGAGGAGGGTTTCTCCCTTCTAATTCTTGACTACTTTATTTCTTATTCATTGAT
TACATAAGTAGGCTAGCTGCCTGCCCCTATCTAGCTAGAGATCCTTATCTCCTTAAAACTCTCC
TAAAAACTCTTAACAAACTAATAACTAATAACCTTCCTAGACAATCTCAACTGATAACCTTACT
AGACAAACTACTAATTGATAACCATTACACAAATATGTGAACCAAACGGCACCTAAATGAAGTC
TCGTACATAGTTTATAAGGACACTTGGCCTGCTAACCGAATGGAGGAACCAAACTCTTGAAATT
GAGGCAATAATCTAGGCGCGGTGACCGCGTCTACGTCACGCTGAGCGCGTCCGCGTCCCTGGTA
CCATGCTTCTTGCCAGAGTAGTGGTGGCCCCACATGACATACACATTGCAGGAGAATTATTTGA
CCTGTCATTTACTCCTATAGTTCAAAATACTTGGCCAAGTTTGCATGACCATTCTTTTTCTGGT
GATGTGTTTTCATCTTTGTGAGTAACAGACTGTGCCACCCACGCTATTCATTCAAGTAACACGA
CAGACTTATATGGTCTTACTGCCTGTGTTCCTTTGCTTCAGGAGGAAATGCTGTTCTTCTTTAT
GCTTCCAAGTACCATGATGTCCCTGCCATTGTGAACATTTCTGGCCGCTTTGCATTAGAGCGAG
GTATGGAGGGACGCCTTGGGAAGAATTTCATGAGGAGAATAAACGAAGATGGATACATTGATGT
GAAGAATAAAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.002720871
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b