Detail information of Os11g0473275_circ_g.1


General Information
CircRNA Name Os11g0473275_circ_g.1
ID in PlantcircBase osa_circ_009337
Alias Os_ciR7050
Organism Oryza sativa
Position chr11: 16322695-16322938  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os11g0473275
Parent gene annotation Hypothetical protein. (Os11t0473275-00)
Parent gene strand -
Alternative splicing Os11g0473275_circ_igg.1 Os11g0473275_circ_g.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os11t0473275-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCAACATTCGGTTCAAAGCTCTGTTTCCACAAGGACACAGACTTATCATACTGACAGCACCA
AATTTCAGCTACAGTTGATTGACGATAGCAACACAAaacggaaacaatatcagtgtaacagctt
ggaagccctacggtgttcctcttctggcacaagtatctcgtaatgaaactgtcacgggtatgca
tatccatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACGGAAACAATATCAGTGTAACAGCTTGGAAGCCCTACGGTGTTCCTCTTCTGGCACAAGTAT
CTCGTAATGAAACTGTCACGGGTATGCATATCCATGAGATGGTCCGTAAAATGCTTGCACCTAT
GCAGAAGAATCAGGAATCCCAACATTCGGTTCAAAGCTCTGTTTCCACAAGGACACAGACTTAT
CATACTGACAGCACCAAATTTCAGCTACAGTTGATTGACGATAGCAACACAA
Conservation Information
Conserved circRNAs NA
PMCS 0.274825205
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015