Detail information of BGIOSGA015373_circ_igg.6


General Information
CircRNA Name BGIOSGA015373_circ_igg.6
ID in PlantcircBase osi_circ_014217
Alias Chr04:14011306_14013053(ZS97RS2), Chr04:13399246_13400993(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 11711868-11713615  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015373_circ_igg.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCGAGCTGCTGCTGCCCGCCATGGATGCCGATGAGATTGTCCTCGGCTATTTATCAGCGAAG
GTGTAGCAATCTTGGCCGTGCAACCATCGATTCTTGcctgcaattccttcccaggatctcttcc
cgcgtgtactccgtcagctccaggaagctatccgacgcgaagatctgcacaacccccccacacc
acacccat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCAATTCCTTCCCAGGATCTCTTCCCGCGTGTACTCCGTCAGCTCCAGGAAGCTATCCGAC
GCGAAGATCTGCACAACCCCCCCACACCACACCCATTCTGTCAGTCACCACCAGCACACGCAAA
CACGCCGGCGACCGGCGAGAAGAAGAGACCGGCGGCGGCGAAGTGGCTGCTTACGATGGGGTTG
TCCGGGATCCTGGGGTCGGTGATGACGAAGTTCTTCTCGATGCGCTCCAGCGTGGTGGCCAGGT
CGATCCCCTGCCGGATGTCCTTCTCCCGCTCCGCCCGCTCCCAGCTGTCCGTCCTCTCCACCAC
CTCCGGCGCCGGCGGTGGCGCCGGCGCCGGCTCCTCCACCACCGCCGGCGCCTCCCTGCTCCCC
ACCGAGCTCCTCTTCCCGATCTTGAACCTGCCAAAGCATGGACAGACACAACTCTCAGTGTCAC
TGCCGTCCCGGCAATCTGTCGAACAGGTGGGGTGCGAGAGTCTGACCCCATGAGGGAGGAGCGG
CCGGACTTGCGGCCGCTGGCGAGCCGGCTCAGGCGGGACTCCTCCTTCTTCAGGTCCCAGAGCG
GCGACTTGAAGGACCCGGCTCCTCCTCCTCCGCCCGAGGGAGTGCCGGGTGCCACGACCGGCGA
CATGGCGGCCATCTTGTCCGCGTCGCTCATCTTGGGCGGCGTCAGCAGCGCCGCGTCGGCCGGC
GCGCGCGCCCCGCGCGGCTGCTTCACCGTCTGCACCACCTCCGTCATCGACGACATCGCCTTGT
CCTTCTGCCTCTCTGCGCTCCACACACGCCAATGGCGGCATTGGTAAGACAAGAGAATTAGAGA
AACATCGAGGAAACAGAGGATTCCGCGGCGGCGGCGGCGGTGCTCACCGTCGTAGCGGATGAGC
GACACCGGCAACTCGTTCGGCCGCATCCGCTTGTCGCTGAGCCCCTCCGTGTACTTGCTCACCT
CCACCTGCATCCTGTTCGCTCATACCCGAATCAGAATCGCAGCCCAGAACTCGAATGCAAAGCT
CATCTCATCTCATCAATGGCGACGAACGACTAGTGCTTCGCTTACTTACCCGATGAACTTGATG
ACCTTGCCGTTGTCGTCGCGGATGGGGGTGACGGTGAGGAGGTTCCAGAACGGGGCGCCGTCCT
TGCGGTAGTTGAGCAGGCGGCCGCAGAAGCTGCGGCCGTGCTTGACGGCGTCGCGGATCTTGGC
CACCTCGGCGGCGTCGGTGTCGGGGCCCTGGAGGAAGCGGCAGTTGCGGCCGACCACCTCCCTG
GGGGAGTAGCCGGTCATGGTGAAGAACCCCTCGCTGGCGTAGATGATGGGGCAGTCCGGGCGCG
TCGCGTCGGACACCACGAACGTCTGCTGCAGGCTCGACAGCGCGTCCTTGAGCTCCTGCGACAC
CCGCGGCAGGGAGTCGTGCGACGCGCGCCCGACGCCGCCGTCCACCGACGACTTGCCGCTCCCC
GTGCCGCCGCTGTCGCGCCCCGCCGTCGCCGGCGCCACCGGACGCCACGCCTGCTGCTGGTGGG
CGCCGCTGCTTCCGCTAGGCGCATCCTCGGCGACGATCTCCAAGCCGGCGGTGGCGCCGCCGCC
GCCGGAGGTGGGGAACGCCATCCACTTCTCCACCGCGTCGACTATCTCCTTCGAGCTGCTGCTG
CCCGCCATGGATGCCGATGAGATTGTCCTCGGCTATTTATCAGCGAAGGTGTAGCAATCTTGGC
CGTGCAACCATCGATTCTTG
Conservation Information
Conserved circRNAs osa_circ_023361
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021