Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os01g0512100_circ_g.7 |
ID in PlantcircBase | osa_circ_001908 |
Alias | Os_ciR2140 |
Organism | Oryza sativa |
Position | chr1: 18047494-18048149 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, find_circ |
Parent gene | Os01g0512100 |
Parent gene annotation |
Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE T O GRAVITY) (AtARG1) (AtJ15) (AtDjB15). (Os01t0512100-01) |
Parent gene strand | + |
Alternative splicing | Os01g0512100_circ_g.1 Os01g0512100_circ_g.2 Os01g0512100_circ_g.3 Os01g0512100_circ_g.4 Os01g0512100_circ_g.5 Os01g0512100_circ_g.6 |
Support reads | 6/3 |
Tissues | root/shoot, root, seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0512100-01:4 |
Conservation Information | |
---|---|
Conserved circRNAs | osi_circ_009632 |
PMCS | 0.499071075 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
18047534-18048146(+) 18047549-18048101(-) 18047699-18047945(-) |
Potential amino acid sequence |
MYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSALKSGTHIFAVYGDNFFKPASYT IEAMCAKSYEDTTQRLKEIESKILEKRNDLRQFETEYRKALARFQEVTNRYTQEKEAEDSQKTG KVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSALKSGTHIFAVYGDNFF KPASYTIEAMCAKSYEDTTQRLKEIESKILEKRNDLRQFETEYRKALARFQEVTNRYTQEKEAE DSQKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSALKSGTHIFAV YGDNFFKPASYTIEAMCAKSYEDTTQRLKEIESKILEKRNDLRQFETEYRKALARFQEVTNRYT QEKEAEDSQKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSALKSG THIFAVYGDNFFKPASYTIEAMCAKSYEDTTQRLKEIESKILEKRNDLRQFETEYRKALARFQE VTNRYTQEKEA(+) MQEIHACRCHLTSLLTIFRFFFLGVSVGHFLKPR*(-) MQPQDPWPLPTHSLLNPYDTLENARNTCLQMSPYQSSDYLPLLFLGCICWSLLETALKLFCTQF QIGANHFSSLEF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ye et al., 2015;Chu et al., 2017 |