Detail information of Os01g0512100_circ_g.7


General Information
CircRNA Name Os01g0512100_circ_g.7
ID in PlantcircBase osa_circ_001908
Alias Os_ciR2140
Organism Oryza sativa
Position chr1: 18047494-18048149  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, find_circ
Parent gene Os01g0512100
Parent gene annotation Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE T
O GRAVITY) (AtARG1) (AtJ15) (AtDjB15). (Os01t0512100-01)
Parent gene strand +
Alternative splicing Os01g0512100_circ_g.1 Os01g0512100_circ_g.2 Os01g0512100_circ_g.3 Os01g0512100_circ_g.4 Os01g0512100_circ_g.5 Os01g0512100_circ_g.6
Support reads 6/3
Tissues root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0512100-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTTTCAATTTGGAGAGAGCTTTGATCGAGTTAAATGGTGTGCAGGCTTTAGCGCGGTTTCAA
GAAGTGACCAACAGATACACCCAAGAAAAAGAAGCGgaagatagtcagaagactggtaaggtga
catctgcaggcatgtatttcttgcattttcaagtgtatcgtatggattcaacagtgaatgcggt
atgtatgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 402
Transcript exons: 18047494-18047583,18047667-18047775,18047850-18047998,18
048096-18048149
GAAGATAGTCAGAAGACTGGTAAGGTGACATCTGCAGGCATGTATTTCTTGCATTTTCAAGTGT
ATCGTATGGATTCAACAGTGAATGCGTTGGCAATGGCCAAGGATCCTGAGGCTGCATTCTTTAA
AAGGTTGGAAGGTCTCCAGCCGTGCGAAGTGTCGGCTCTCAAATCTGGAACTCATATATTTGCT
GTATACGGTGATAATTTTTTCAAGCCAGCTAGCTATACAATTGAAGCAATGTGTGCAAAGAGTT
ACGAAGACACAACACAGAGGCTAAAGGAAATAGAGTCTAAAATTCTAGAGAAGAGAAATGATTT
GCGCCAATTTGAAACTGAGTACAGAAAAGCTTTAGCGCGGTTTCAAGAAGTGACCAACAGATAC
ACCCAAGAAAAAGAAGCG

Genomic sequence GAAGATAGTCAGAAGACTGGTAAGGTGACATCTGCAGGCATGTATTTCTTGCATTTTCAAGTGT
ATCGTATGGATTCAACAGTGAATGCGGTATGTATGTTCTGCTATATAGCTTTAGTTTTTATGCT
CTTTGGGCCTGATGTGATGTGAGACTTTGCTGCTTCCTACTACAGTTGGCAATGGCCAAGGATC
CTGAGGCTGCATTCTTTAAAAGGTTGGAAGGTCTCCAGCCGTGCGAAGTGTCGGCTCTCAAATC
TGGAACTCATATATTTGCTGTATACGGTCTGCAAACTTACTTTATCTGTTTATATGAATGACAT
ACCTCCGTTCTGATCCATCCTAATTAATATGTTCAGGTGATAATTTTTTCAAGCCAGCTAGCTA
TACAATTGAAGCAATGTGTGCAAAGAGTTACGAAGACACAACACAGAGGCTAAAGGAAATAGAG
TCTAAAATTCTAGAGAAGAGAAATGATTTGCGCCAATTTGAAACTGAGTACAGAAAAGTCAGCC
ACTACATCTTTTTCTACATAACACATGAAATATGTATTTAGTTTTCTTTTCAATTTGGAGAGAG
CTTTGATCGAGTTAAATGGTGTGCAGGCTTTAGCGCGGTTTCAAGAAGTGACCAACAGATACAC
CCAAGAAAAAGAAGCG
Conservation Information
Conserved circRNAs osi_circ_009632
PMCS 0.499071075
Functional Information
Coding potential Y
Potential coding position 18047534-18048146(+)
18047549-18048101(-)
18047699-18047945(-)
Potential amino acid sequence MYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSALKSGTHIFAVYGDNFFKPASYT
IEAMCAKSYEDTTQRLKEIESKILEKRNDLRQFETEYRKALARFQEVTNRYTQEKEAEDSQKTG
KVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSALKSGTHIFAVYGDNFF
KPASYTIEAMCAKSYEDTTQRLKEIESKILEKRNDLRQFETEYRKALARFQEVTNRYTQEKEAE
DSQKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSALKSGTHIFAV
YGDNFFKPASYTIEAMCAKSYEDTTQRLKEIESKILEKRNDLRQFETEYRKALARFQEVTNRYT
QEKEAEDSQKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSALKSG
THIFAVYGDNFFKPASYTIEAMCAKSYEDTTQRLKEIESKILEKRNDLRQFETEYRKALARFQE
VTNRYTQEKEA(+)
MQEIHACRCHLTSLLTIFRFFFLGVSVGHFLKPR*(-)
MQPQDPWPLPTHSLLNPYDTLENARNTCLQMSPYQSSDYLPLLFLGCICWSLLETALKLFCTQF
QIGANHFSSLEF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017