Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038163_circ_g.5 |
ID in PlantcircBase | zma_circ_002368 |
Alias | circ2022 |
Organism | Zea mays |
Position | chr6: 150029734-150030273 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d038163 |
Parent gene annotation |
pyruvate orthophosphate dikinase1 |
Parent gene strand | + |
Alternative splicing | Zm00001d038161_circ_ag.1 Zm00001d038161_circ_g.1 Zm00001d038163_circ_g.1 Zm00001d038163_circ_g.2 Zm00001d038163_circ_g.3 Zm00001d038163_circ_g.4 |
Support reads | 15 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d038163_T026:2 Zm00001d038163_T013:3 Zm00001d038163_T023:3 Zm00001d038163_T015:3 Zm00001d038163_T017:3 Zm00001d038163_T006:2 Zm00001d038163_T016:2 Zm00001d038163_T004:2 Zm00001d038163_T020:2 Zm00001d038163_T002:2 Zm00001d038163_T001:2 Zm00001d038163_T019:2 Zm00001d038163_T008:2 Zm00001d038163_T018:3 Zm00001d038163_T027:3 Zm00001d038163_T012:2 Zm00001d038163_T025:3 Zm00001d038163_T007:2 Zm00001d038163_T024:2 Zm00001d038163_T010:2 Zm00001d038163_T009:2 Zm00001d038163_T029:1 Zm00001d038163_T005:2 Zm00001d038163_T021:2 Zm00001d038163_T022:3 Zm00001d038163_T003:2 Zm00001d038163_T014:2 |
Conservation Information | |
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Conserved circRNAs | osa_circ_027843 osi_circ_006239 |
PMCS | 0.091108272 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |