Detail information of BGIOSGA003599_circ_g.6


General Information
CircRNA Name BGIOSGA003599_circ_g.6
ID in PlantcircBase osi_circ_009528
Alias Chr01:18463034_18465547(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 19137541-19140055  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA003599
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA003599_circ_g.1 BGIOSGA003599_circ_g.2 BGIOSGA003599_circ_g.3 BGIOSGA003599_circ_g.4 BGIOSGA003599_circ_g.5 BGIOSGA003599_circ_g.7 BGIOSGA003599_circ_g.8 BGIOSGA003599_circ_g.9
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA003599-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTTCCTGGACGAGCTGTGCTCCATCGTGGTCGTCATAGGCATGGTGCCCGACCGACATCATC
TGGGCTCAGAATCAATCTTCTTTTGTGGTGCAGAAGgccacttcataaagagctatacaaaatg
cgcccttcatcgttctttttaccaacattccttgaagctattaggaccaatacagaagaaagct
ttagaagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCACTTCATAAAGAGCTATACAAAATGCGCCCTTCATCGTTCTTTTTACCAACATTCCTTGAA
GCTATTAGGACCAATACAGAAGAAAGCTTTAGAAGCATTATGACTGAGCCAGTTCCTGGTGTTT
ATTCATTTGCTATGTTACAGCCTAATTTTTGTGAGATGCTATTACAGGAGGTATGGTAGCATAT
AACATACAATTTTGATATTGCTATATCATGTTTTGTTACAAACTTACAATGATAAAACAATGTT
TTACACCTTGTAGGTAGAGAACTTCGAAAAATGGGTCCACACAATGAAATTTAAGATAATGAGG
CCAAATACAATGAACAAGTATGGTGCTGTCCTTGATGATTTTGGCCTGGAAGTTATGCTGAACC
AATTCATGGAACAGTTCATAGCTCCAATGTCTACAGGTTATCTTATCGACTGCTATCCTTGTTA
AATAGAGGCAGAATCACTAGCATTTTCAAAATATATTTCCTATATTGATTTTATGCTGTGTTAA
TCTTCAGTATTATATCCTGAGGTTGGTGGAGGAACATTAGATACACACCATGCTTTTGTTGTTG
AGTATGGGAAAGACAGGGATGTTGAACTCGGTAAGTTACCATTATAAATTTATAATATTGTTTT
ATACTTAATAGCCTGTAAAATCATATGAAGTAAAAGAATTGTTCTTGATTGATCATGTCTGCAT
TCAGCTATTCCATGTAACTATGGATACTATTTGTATTGTTGTTCCTCCCTGTTGAGAAATCAGT
CAATCACATATCAGTTTTTGAGCCAATGGTTTGGCCTTTCCTACTTAAAATGGCAATATGTTGA
AACTAGTTTCAATGACTAGATGATAAATCAATATGACCAACTTTCACTGTCAGGAACTTGTGGA
ACTGCTATCAAAGGTAGAGGTCACATCTTCTCTATCTAGTCTGGAGTCTGGAATTTCTCTTCTC
TCTCTGTCTACTATATTTCGGACAGAGGGAGTATCTTATTGTGCACTATGCGCTTAGATATATT
TGTACTACTATCACCTAGGGGTGTTCATCGACAGGAAAGATTAGCTATCATGATGAAAAATGAA
TGCTATGCTGGCTCTTAATGAAGTAGAACAAAGACCGGGGCTGATAGAATGGCATGATAAAACC
GTTTTCTTTCTCAGTTTTTTTTTTTTTGAGGAGGGGGGGGGGGGGGTGGTAAGGATTCAAGGGA
CTAAGAAAGTTCTTAAGTTCAACTAACTTAGTGCCCGAAATTTCAGTGGATAACTTACATCTTT
CCAAACCTTGCTTTAAACTACCTTACGAACAGCAGTTGAGAACTTGAAATCTGGGCAGCAGATG
AGATTTAGTAATTCTGCTTTTTGGTGCCTACATGTTGTACCGTTTATTTTACAACTAATTGACA
TTGTAGTCATGTTAGGCCACTGAAATGATCATCAGTTAATTGTTTGGGGTGTTCTCGACTTCTT
GTTATAAATGAGGCCAGAGGCATAATTTGCTTCAGAAAGGAGTGGCTAGTATCATGTTACCAGA
AACTTTAAGGTCCTTGCCTATTAGTCTTAAATTCTTTTCAGAGCCAATCCACCTTCCCAGGTTG
TTCCTGCATCGCAGATCGCACACATTACTAGAATTTCTGGATGTTAAGATGGTTTCACGCTTTT
ATTTACTTCTTTTATCCAGGTAGTTAAATATGAAACATTAAAAGCATGTCAGAAAACTTCATTC
TATTCGCGTGAAATTTTGATATGGTATATTTGTCACTGTTCTAAAACAATACCTACAAGGCCAC
ACACAAGGAATGGGTGCGCAACCTTGTAATGCTTAAGCCGCATTAGAGTTCCATAAAGAAATGT
TCTTTTGTAATTAACAGAGTTCCATAATTTCATTAATTTTCTTAGTTGCACTTTTTTTTAAGTA
TATCGATTTGCCTTAGTTCCTAATGATACTTTTGCCATTTTTCATTCTCAGTTTTTGTTCAAAC
ATTTCTTTTCTGTTCTAAACCGTTTCTCAACATTATAGGTTTCCACGTTGACGATTCTGAGGTT
ACATTGAATGTTTGCCTTGGCAAGCAATTCTCTGGTGGTGAGTTATACTTTCGTGGCATCCGTT
GTGAGAATCATGTGAATTCAGAGACACAGCATGAGGTAGATGAACTTTTATGTTTTAGTTGCAT
TTAATATCTATTTTTAAATTTCAAACCCACCTCTTTTCTTCTCTTCTGTGAGTGCATTTATGTG
GTGTTGAAACTTATTTTGTTCAGATTTTTTTTTTTTGCATGAAACTTGTCATTTACTTGCAACA
TATTCTGGTTAATTTGTTCACGGAAGTTACACAATACATAATTGAAGATATATATTTTTTTACC
CTTTTCAATTTCATTACTCATGTTGCAGGAAATGTTCGATTACTCTCATGTTCCTGGACGAGCT
GTGCTCCATCGTGGTCGTCATAGGCATGGTGCCCGACCGACATCATCTGGGCTCAGAATCAATC
TTCTTTTGTGGTGCAGAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021