Detail information of Os12g0538300_circ_g.1


General Information
CircRNA Name Os12g0538300_circ_g.1
ID in PlantcircBase osa_circ_011870
Alias NA
Organism Oryza sativa
Position chr12: 21444327-21445863  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os12g0538300
Parent gene annotation Dor1-like protein family protein. (Os12t0538300-01)
Parent gene strand +
Alternative splicing Os12g0538300_circ_g.2 Os12g0538300_circ_g.3 Os12g0538300_circ_g.4 Os12g0538300_circ_g.5 Os12g0538300_circ_g.6 Os12g0538300_circ_g.7 Os12g0538300_circ_g.8 Os12g0538300_circ_g.9 Os12g0538300_circ_g.10
Support reads 5
Tissues seed
Exon boundary   No-No
Splicing signals   GG-CA
Number of exons covered Os12t0538300-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGCAATGCACCAAATAAGTAATCATCTTACCACTCTTCAAGTTATGTTGCCAAATATAACGGA
AGGTGGCTCTCTCTCCAACATTCGTGAACAGTGCATgatagaggagataccgaatttaacatct
ggctgcaccgagtttgttgagtcagcacagcaaattttagaagagaggaagctcaatcagacat
tactagcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATAGAGGAGATACCGAATTTAACATCTGGCTGCACCGAGTTTGTTGAGTCAGCACAGCAAATT
TTAGAAGAGAGGAAGCTCAATCAGACATTACTAGCCAATCACAGCACACTGCTTGATCTGCTTG
AAATCCCACAACTGATGGACACGTATGTGCCATTTTTTTTTATAATTTCTTAAAGACCTTCAGT
CATCTTGTGTTGTTTGATGTTGTTGATATGCTGTTTAGTTCTCGATTCTTCTCTAATTTCTGTA
TGCTACAGATCCATTTTGTTCAGTAAAACATGGTTTGATTTGTACAATTGACGAATCATGAAGA
ATTACATTTAACAATCTACATGCTCACAGATGTATACGAAATGGGAACTATGATGAGGCACTTG
ACCTGGAAGCCTTTGTTAGTAAAATATCAAAGTTGCACCCTGAGTAAGTCATTTGACATAATCT
TTATTATGGCCTTTGTAATTTGCAATTAATTTAACTGTATGCCTTTTCGATTGAAGTTTACCTG
TTATCCAAGGCTTAGCTGTTGAAGTCAAGAAGACAATACAGTCATTAATTTCTCAGCTTCTCCA
GAAGCTTCGATCAAATATTCAGGTGATTATGTTGGTGCACTAACAATCTGTCATTGGTTAAACC
ATTATCGTATTTTTCATTTGCTCCATCTGTTCTATGCAAGTTGAACATTGTAAAGATTGTATCC
TGTATATAACCGAGTTCTTTGTTGTGCAACTAATTTCATTTCTTTTCCAAATTTACTTGGTTTT
GTCTCCTCTTAGCACATCTATGTCTAACTCCTGGTCATTTGACTGTCTACAGTTGCCTGAATGC
CTCCGTATTGTTGCACATTTGCGCCGCATTGGAGTGTTCAGTGAATCAGAATTGCGTTTACAGG
TATTCTGAACTTCTGATGTAATCTGGATTTTTTTTTTGCGGGGAATAATCTGAATAGAATTATA
CGTCAGTATAATGCTTTTACATTTAATTTTGAATTTATGAGTAATTCATTTGTTACCCTAAACC
CTTACTTCAAAGCGGTGGTCCAGAGTATATAAACTACTAATGGAGGAATTTTAATTGTAATAAT
GACATTTCATTTAGTTCAAAGTGTTGGTCCAGATTACTACAAACTACTATTGGAGGAATTTTAA
TTGATAATAATGATATTTCACTGAGTCAAATTCATTGGATGATACATATCGAGTATTTTTCTCT
CTCCTAATTCTGATATAGTTTCTAGTTCTTGAGATGCAGGGAAGCTTGGCTTTCTGGGATTCTT
GATGACCTGGACCAAAGGAATGTATATGGGTATCTAACAGGCATGGTGGGTTACCACAGAACAC
ATCTATTTGATGTTGTCAATCAATATCGAGCAATATTCAACAATGATAAGTCCGGAAGTGATGA
GAACTACGATGGTGGATTGCTTTTCAGCTGGGCAATGCACCAAATAAGTAATCATCTTACCACT
CTTCAAGTTATGTTGCCAAATATAACGGAAGGTGGCTCTCTCTCCAACATTCGTGAACAGTGCA
T
Conservation Information
Conserved circRNAs NA
PMCS 0.250616439
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017