Detail information of Os12g0538300_circ_g.5


General Information
CircRNA Name Os12g0538300_circ_g.5
ID in PlantcircBase osa_circ_011874
Alias Os_ciR7399
Organism Oryza sativa
Position chr12: 21444328-21447338  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os12g0538300
Parent gene annotation Dor1-like protein family protein. (Os12t0538300-01)
Parent gene strand +
Alternative splicing Os12g0538300_circ_g.1 Os12g0538300_circ_g.2 Os12g0538300_circ_g.3 Os12g0538300_circ_g.4 Os12g0538300_circ_g.6 Os12g0538300_circ_g.7 Os12g0538300_circ_g.8 Os12g0538300_circ_g.9 Os12g0538300_circ_g.10
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os12t0538300-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGGGACCCCAGCTAACGGACCACCTCCAGTGGCGAACGATGATTCTGGGACCTCCTCAGCAC
CAGCTCAGCCTGATGGGCAAACCACTGCAGCAGCAAatagaggagataccgaatttaacatctg
gctgcaccgagtttgttgagtcagcacagcaaattttagaagagaggaagctcaatcagacatt
actagcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAGAGGAGATACCGAATTTAACATCTGGCTGCACCGAGTTTGTTGAGTCAGCACAGCAAATTT
TAGAAGAGAGGAAGCTCAATCAGACATTACTAGCCAATCACAGCACACTGCTTGATCTGCTTGA
AATCCCACAACTGATGGACACGTATGTGCCATTTTTTTTTATAATTTCTTAAAGACCTTCAGTC
ATCTTGTGTTGTTTGATGTTGTTGATATGCTGTTTAGTTCTCGATTCTTCTCTAATTTCTGTAT
GCTACAGATCCATTTTGTTCAGTAAAACATGGTTTGATTTGTACAATTGACGAATCATGAAGAA
TTACATTTAACAATCTACATGCTCACAGATGTATACGAAATGGGAACTATGATGAGGCACTTGA
CCTGGAAGCCTTTGTTAGTAAAATATCAAAGTTGCACCCTGAGTAAGTCATTTGACATAATCTT
TATTATGGCCTTTGTAATTTGCAATTAATTTAACTGTATGCCTTTTCGATTGAAGTTTACCTGT
TATCCAAGGCTTAGCTGTTGAAGTCAAGAAGACAATACAGTCATTAATTTCTCAGCTTCTCCAG
AAGCTTCGATCAAATATTCAGGTGATTATGTTGGTGCACTAACAATCTGTCATTGGTTAAACCA
TTATCGTATTTTTCATTTGCTCCATCTGTTCTATGCAAGTTGAACATTGTAAAGATTGTATCCT
GTATATAACCGAGTTCTTTGTTGTGCAACTAATTTCATTTCTTTTCCAAATTTACTTGGTTTTG
TCTCCTCTTAGCACATCTATGTCTAACTCCTGGTCATTTGACTGTCTACAGTTGCCTGAATGCC
TCCGTATTGTTGCACATTTGCGCCGCATTGGAGTGTTCAGTGAATCAGAATTGCGTTTACAGGT
ATTCTGAACTTCTGATGTAATCTGGATTTTTTTTTTGCGGGGAATAATCTGAATAGAATTATAC
GTCAGTATAATGCTTTTACATTTAATTTTGAATTTATGAGTAATTCATTTGTTACCCTAAACCC
TTACTTCAAAGCGGTGGTCCAGAGTATATAAACTACTAATGGAGGAATTTTAATTGTAATAATG
ACATTTCATTTAGTTCAAAGTGTTGGTCCAGATTACTACAAACTACTATTGGAGGAATTTTAAT
TGATAATAATGATATTTCACTGAGTCAAATTCATTGGATGATACATATCGAGTATTTTTCTCTC
TCCTAATTCTGATATAGTTTCTAGTTCTTGAGATGCAGGGAAGCTTGGCTTTCTGGGATTCTTG
ATGACCTGGACCAAAGGAATGTATATGGGTATCTAACAGGCATGGTGGGTTACCACAGAACACA
TCTATTTGATGTTGTCAATCAATATCGAGCAATATTCAACAATGATAAGTCCGGAAGTGATGAG
AACTACGATGGTGGATTGCTTTTCAGCTGGGCAATGCACCAAATAAGTAATCATCTTACCACTC
TTCAAGTTATGTTGCCAAATATAACGGAAGGTGGCTCTCTCTCCAACATTCGTGAACAGTGCAT
GGTAAGCTTCTGCTAGTGAGTAACAGGAGTTTGATTGGGATCATTTGATTCATCATAAATTTGC
ATCACTTGTTTCATCTTGCAGTATTGTGCAATGGGCCTTGGCTTGGTTGGACTGGATTTCCGTG
GCTTACTTCCACCAATTTTTGAAAAGTAATTAGCATTTTCTTGTAAATTTTATTAGAGTATTCA
CGCTGCAAACAGAACCTATTCTTATTGATGATGTTATCTGCATGCAGAGCTGTGTTAAATTTGT
TTTCAAAGAACATGGGTACAGCAGTCGAGAATTTTCAGGTAATGCAAAATGTGCACAATCGTTA
TCGATGTGGATGTGCTATTTACTTCTTATCTAGATAATAGAATGAATTTAGGTTACAGGCTTCA
TGGTAGATGGTACTATTTTACTTAGTGTTTTCAGCTGTAGTCCACATTTTCAAATGTCTATACT
TTCTTCCTCAAACATTATTTTAATTTCACCATTTTACCTTCTATCATGTTAGGTTGTTCTGGAT
TCACATCGTTGGGTTCCAATGCCATCTGTTGGCTTTGTAGCGAATGGAGTTGTGGATGAGACTT
CTGATGATGTGACGCCGCCTTCTGTTTTAATGGAGCATCCACCTCTTGCAGTCTTTGTCAATGG
TAAGTTTTGTTGATCTCTCTCTCCCTCTCATTCCCCTGCACATGGTAATTCTACACTTAAATGA
AATATTGAATTTATACACCATCATGTTGAATCTAATGGTCATGTGTTGTGATGGCTGTATAAAA
GTTGATATGTCATTTGTTTTAACTTTCTGTGCAGGTGTTTCAGCGGCAATGAATGAGCTAAGAC
CGTGCGCACCATTGAGCTTGAAAAATGTACTTGCCGAGGAGGTGGTGAAGGGATTACAAGCCGT
TTCTGACTCCCTAGTCAGATACAATGCCATGCGGATGCTGCGTGGAAATGAGTCCTCTCTTTTC
CTTTCACTTTGCCAGGCATTTATTGAGGTAAGGGGCCTCTGGAAAAAGGAGTATTTTTGTCCAA
TTCCTCAAACAAATAATATTCCAAATTATGACCAGGTGGTGTTTCTATACACCTAGAGAAGGAT
TACATATTAATTTATCCTCGCAGGTCGCATATCCTTACTGCTCTGCATGTTTTGGCCGATGCTA
CCCCAATGGAGCAATATTGATCACAGAGCGACGAAGCACATTCGACGCAGTCAGCCAGCTGCTG
ACTGTACCTGCAAGGTCCAACAGCTCAGGGATCAGCATCGAACGGAGGCAATCAGGCAGCATTG
AGAGAAAACAGTCTGGAGCCATTGAACGTAAGCAATCGGAAGGCATCGAAAGAAAGCAGTCGAT
CGACGAGAGCGCGGGGACAACAGCCACCGACAATGGGACCCCAGCTAACGGACCACCTCCAGTG
GCGAACGATGATTCTGGGACCTCCTCAGCACCAGCTCAGCCTGATGGGCAAACCACTGCAGCAG
CAA
Conservation Information
Conserved circRNAs osi_circ_009784
PMCS 0.333948644
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015