Detail information of Os06g0499900_circ_g.3


General Information
CircRNA Name Os06g0499900_circ_g.3
ID in PlantcircBase osa_circ_030971
Alias Os06circ10711
Organism Oryza sativa
Position chr6: 17599076-17601814  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os06g0499900
Parent gene annotation Similar to Dihydrolipoamide acetyltransferase (E2) subunit of PD
C (Fragment). (Os06t0499900-01)
Parent gene strand -
Alternative splicing Os06g0499900_circ_g.1 Os06g0499900_circ_g.2 Os06g0499900_circ_g.4 Os06g0499900_circ_g.5 Os06g0499900_circ_g.6
Support reads 3
Tissues panicle
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os06t0499900-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTTCTTCACATGCACAAGATATCATAAAGTGTGACTAGATATTTCATGATGTCTGTTATCAT
AAAAATAATGAAACAAAGAATACCTTGCGTATCTGActgaggaggattgatgattgcacagaag
tggtcgactgggtacattcccaaatttgagatgctgcagaagcaatgtcaaaacattcaaatat
caacagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAGGAGGATTGATGATTGCACAGAAGTGGTCGACTGGGTACATTCCCAAATTTGAGATGCTG
CAGAAGCAATGTCAAAACATTCAAATATCAACAGCAGTACAGGATTTCCCAAAAGCAATGACAA
AAGGGTAAAATATCACATGCCTGAAAGTCCCTCCCTGAAATTCATTAGGAGCAAGCTTCCCAGC
ACGTGCCTTTTCAGCCAACTGCTTAACCTACAGTGATAGGGAAAGGAAAACTGATTATATCTCA
TAACCATAAACATGAAGACTACTTTAAAGGTCGAAAATCAGGAATATATGATAACTGATAGCGA
GATGCAACTATCTACTTATAGTCCTGCCTTTCATATACAAAGACTTTTGTCTTCCACTAGACAA
AACCCAGGTCTTTCCAGAAATGGTTCTCAACTTTCCAAAGAAAGTCCCAGCAGTCAGGTATCTA
TGAAAACTGTTGACCACAGATTTTACATTTCTAAATCATTCCAAGACCATGTCTTAAGATAGTT
GATTACAAGCGTTACATGTGCCTGTGACATTTCATGCTAAAGAACTTCTGAAACTATGACAGTA
AGGTTGAACCTTTTAAACATTCTCTCATACCTCTGAGGATATTGCTGATATAGTCTTTTGATCT
GCATTTCTTATAATAGGAGTCATCAGGCCCTAAAGTTGCAAAGGTCATTGTTAATGTGCATGGA
TAGGCTAATAAAAATTATAAACAGTACTTTTCAATTTCAATACCTTCTCTGTAGCAACTGCGAT
AGATATATCAACTGAAACACACTTCTGGGCTTGTTCCTTGTCATTGTTCCAGTATGCTGGAAAT
TCATGAGAAAAGAATAATGATGAGCTATCCATTAGACCAAACAAAGAAGTTGACTTAAACCACT
ATGTGTAAATTGAATATTCAGTTAGTCCATTTGCAGCAAAAATTCTAAGTTTCTAACATTCCAA
TGCAATGACATCGTTGGATTCATCCGTTTGGTCGGGCGGTGCAAATCAATAGTGGTTGAGATGA
TTGTAGTCAGGTGATAGTATTTCTACCCTTTGCCAATCTGTTACAAAATTAGCCTATATCCACC
AGTACCACCATGTTATTTGTGAACTGCCAGTAGTATAGCTCATAGTATTCCAACGGTGATGTAT
CATGTGCGCCTTCTCGGTGCCAACATGCAAATCTCCATCGCATGCCATCTAACAACTTGAGAAT
GATTCATGTTCACTGACTTTGATCTTGTGGATCTTGTGACATTATCGACACTAGCATATGTAAA
AACAATAATGCTGGAAGTATAACTACGGATGATGGTGCATGAGCCCTCCAAGATCAAACAGATT
GAAAACTGTCATTACTTGTTCAAGATCAGTGTGGACATTAAATGTACAGCAAGAAGGGTAACAA
GGATTTGCACCTGATATGCTTGCTATTACAATCAAAGATATAGTAACACAACCACCAAGTTTCA
CATTTGCATGAATTCAGATAAGAATTACCATTTGCTTCTGGTACATTCCGTAAGGCAAGTGCAA
CAGCCTTTATGACAATGTCATTTACTGAAACTTTAACCCCATGTTGCTCTGAAATATTAGAAAG
CATGAGAAAGAAAAAAAAACCTTTTCAGGTTAGCTAACCAATCTTCATATATCAAATTAAAGAA
GATAAATAGCACACCTTTCAGTTCATTCCTGAAAGCGAGCAAGGGATCCAGTATAACATCTGAC
AACAATGTAACGTATAATTATGCCAGCACAACCAAGGTATTGCAAAATGTGCATTAGATGAATA
CACACCTTGTGATAAATATAAATGTGGAGTGGTCTGCTTTGATTCAAGCAACCTTTTTGCAATC
ACCTACAATATAAAAAAGAACCTGTTGGACACTGAGAACAAGAATAGAAGATGCATCATTCACT
ATGCATTGTAATGCTATAAACACAAACTTAAGCAAGTTCATTTTCTTAAAGGCTCAACAAGGCA
ACTATGAGAAAAAGAAAAGAAAATGAATTAATGATAAAAGGCTATAAAATTGACGCCTGAAAGC
ACAAAGCCAAAGCCAATCTCTAGTTATTACTCCCATAGTCAAAATAATGTCTTTGGGGATATGC
TTCCAATCAAACTTTCAAAGTTTAAACATCAATTTGTTCTTAGATATTTATATTGCATATATGT
ATATGGCGATCACATGTAGATTGTCTCAAAACATAATTTCCAAATATTATTATTTCCTTTTAAC
TTTTACAAATATGTGGCAAGAGAAATTAGTGGTCAAAGCTGCATTTTCAGACAATGCCGACATC
TAAAACGGCATGCTTTTGTGACCAGTGGCTGTACCAGTTATGCATAGTTGTTCAAAAAAAACTT
TACACCACTCTACAGACATCTCTATAGGTAGATGGGGGATAAGCAGAGTTTGGCATGGGCAAGG
GCAAAACCATGTCCTCACGAAGGTGATTGCAAGCCTGTCAATGACCTAACGGCCATTTCAACAT
TTTAACAACTCAAAATGTGACAAACTATGCTATTATATATTAATAACCTAGTAGTATGAAAATT
TGTTCTTGACGTTTTAGACTTAATGAACTGAAATTAATTTCCATTAGATCAGCCTTGGATCATG
CTTTTAGTCTTTTAGCTTTTCTTCACATGCACAAGATATCATAAAGTGTGACTAGATATTTCAT
GATGTCTGTTATCATAAAAATAATGAAACAAAGAATACCTTGCGTATCTGA
Conservation Information
Conserved circRNAs NA
PMCS 0.115839169
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015