Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0523100_circ_g.2 |
ID in PlantcircBase | osa_circ_024608 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 26169815-26172666 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | u-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0523100 |
Parent gene annotation |
Similar to OSIGBa0153E02-OSIGBa0093I20.5 protein. (Os04t0523100- 01);Similar to OSIGBa0153E02-OSIGBa0093I20.5 protein. (Os04t0523 100-02) |
Parent gene strand | - |
Alternative splicing | Os04g0523100_circ_g.1 Os04g0523100_circ_g.3 Os04g0523100_circ_g.4 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0523100-02:4 Os04t0523100-01:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.111791047 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
26172561-26169815(+) 26172568-26170294(+) 26169823-26172586(-) 26172474-26172633(-) |
Potential amino acid sequence |
MQNGRLWYLLLQVLIQAWTLCNDTQKVCVLPQYIVP*(+) MDDFGTYCSRYSSKHGLFVTILKKFVYFHNILFPDMLAYLLQSDQEVDHFVLVIAALHDLFQWL QLEFGCFEWHYVTQTKELLCPSELDDWYPIRKARPF*(+) MSGNNILWKYTNFLSIVTKSPCLDEYLEQ*(-) MADDPSLDFGEFPQPFCSQQVVSFQPSVTTSGSGGMPVYLDCSSGMDSNTVMLSTTPSVVVSTT SSNTVADPGQNLKYGGPLAADWSRLELDVLKDGLQKYGNEQGIMKYIKIAASLPSKTVRDVAMK CQWLGKRENSRRRKSEDHHTGRKMKERKAKMAEPSLWGTNHPVQTDTRVPSFVSHNAIQNNQIL TGATEIDRAMQQLLVQNDRLLDQIEANMLACQGTIYCGSTQTF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |