Detail information of Os04g0523100_circ_g.2


General Information
CircRNA Name Os04g0523100_circ_g.2
ID in PlantcircBase osa_circ_024608
Alias NA
Organism Oryza sativa
Position chr4: 26169815-26172666  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os04g0523100
Parent gene annotation Similar to OSIGBa0153E02-OSIGBa0093I20.5 protein. (Os04t0523100-
01);Similar to OSIGBa0153E02-OSIGBa0093I20.5 protein. (Os04t0523
100-02)
Parent gene strand -
Alternative splicing Os04g0523100_circ_g.1 Os04g0523100_circ_g.3 Os04g0523100_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0523100-02:4
Os04t0523100-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGACGACTTTGGTACCTACTGCTCCAGGTACTCATCCAAGCATGGACTCTTTGTAACGATAC
TCAAAAAGTTTGTGTACTTCCACAATATATTGTTCCctgacatgctagcatatttgcttcaatc
tgatcaagaagtcgatcattttgtactagtaattgctgcattgcacgatctatttcagtggctg
catgttag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGACATGCTAGCATATTTGCTTCAATCTGATCAAGAAGTCGATCATTTTGTACTAGTAATTGC
TGCATTGCACGATCTATTTCAGTGGCTGCATGTTAGAAAAATACGCACATGGTCAAATTAAGGA
ACATATATGTAATATGTGTATGAAAAGTCATCAGCTTAATCTTGTCAAAAACCAGTTCTTATGA
ATCTTTCCATCAGCGCATAATTCTAATATCTTATTTAAATTGCATCTGCTAATCCGTTAATTTA
TTATTTACTCTCCCAAGAGCATAATCGAAATGAAGGATTATCATGCGTTGGACCCACAGCAGAT
GGTTTTACATTCTAGAAAAATGGACCTGATACTCAAGTGACCTACCAACCTCCAGTTAGAATTT
GGTTGTTTTGAATGGCATTATGTGACACAAACGAAGGAACTCTTGTGTCCGTCTGAACTGGATG
ATTGGTACCCCATAAGGAAGGCTCGGCCATTTTAGCCTGAAAAAATAACCATTATTACACCAGT
CAAAAACATGTGCATGAAGTACGAAATGCCCAGGGCTAAATAGTTAGGTCTGCTATTTGTTATG
TACTTCAAAACTTCTATTTTTGATAAATCAGTTAAAACAATTATAAGGCTGAGTTCTTTCCCCA
ACTTTTCCAACTCACATTTCTCGTGTTCCGCTCGTACGCTTTTCAAACTGCTAAACGGTGCGTT
TTTTGTAAAAAGTTTCTTTACGAAAGTTGCTTAAAAAATCATATTGATCTATTTTTGAAAAAAA
AATAGTTAAAACTTAATTAATCACGTGCTAATAGACCGCTCCGTTTTCCGTGGGCAGGAAATGG
GTTCTCAACACACACAAAGGAACACAGCCTAAGTTGTTCAAATAGGACCAATAGTTTTTTTTTT
TTTGGAAACGGGGCTAAACGTGTTACTGAATCAGTTGCATTAATCAGAAAACCATTAGGAACGT
TAATACCTTTCTTTCTTTCATCTTTCTTCCAGTGTGATGGTCTTCAGACTTCCGCCGCCTTGAA
TTTTCTCTTTTCTGCAAGAGAACCAAATCATTATTATTATTATTAAAAATAAAAAAAAGAACTA
CTAATAAAAGAAAATAAAGTACTAGGTCAGCTAGGAAACGCACACGCGCATCTTAAATATATAT
AACTGTTGTTTAGTTAGCTATATTCTTAATAAAACTTTTGAAGAATATAAAGCCCATTTTGATT
TTATCACAAACAATATACTGATCCAAAGAGGAACCACACCTTTAGTTTTCAGTACAGTATCAGA
CAATATTTTTTTTTGCCGGGTCAGCCGAAGGAACCGGCGACCAAATTTCATTAAGATTGAGAGG
AATAAAATCAAAGTACAAGTAGTTTTCGCTTGCAACGACAGGAGGCTGTCGAATTAGACTGTGG
CAGGAACCATAGCCCGGCAAACTAAAAAAAAAAACTGGAACGCCAACACAATAGAAAGAAAACT
AAGAACTGCAGTATCAGACAATAATTCAGGCAATTGCCTAGTCAGCTATCGTAACTAATAATAT
GGTGGGTCCAAAAGATATATCACTGGCAAAAAGATATATGCATGTTTTTTATAAAAAAAAATGG
TATAAGAATGTGCTGTCTTTTGATCTACCTTTTTTCCTTTTGGACAATACAAATGTATATCAAT
ATAATAACAGCCCACAAGGAGAAATTGATTGCCAACTCATGTCTCAATATGACTATGGTCCAAA
ATGTGCAACTTTCGCATTTATGTACATAATCATTGAGAAGAAGTGTATCTATCATTCATATTAG
CATATTCAGAGAAAAAAAATGAGGCATAGCAAGCCCCATCCAAAAACTGCTCAAGGAGAAAAGG
GAATATTGTCTGCCTGAACGGTTGTACCTAAGGGAATATTGTCAATTATGTAACGAGCAAACCT
CAAACAGAAGGCATCCTTGTAATCGGGAAAGGGAATGCAGATATTATGTTCGAGTGACTACAAC
TTACAGAGTATATACATATTAGAGATTGCTTACCCCTAGCCACTGACACTTCATTGCGACATCT
CTCACAGTCTTGCTTGGTAATGAAGCTGCTATCTTTATATACTTCATGATGCCTTGTTCATTTC
CATATCTGTGTATATTCATCATTGGCGTCCCAATGAGAACAAAATAAAGGACACACATGAGGGA
TGGTCCAGTGAATAAAAAACATGGACCAGGAAAAAGATATTCCAACATCAACCAATGGAATAGT
AAAACCTCTATCGATTGGACTAACACATGCTCTGAGTTTGCATAAGTTTAGACAATTTAATTAG
ACCACATGCTCTGAATTTGCATAAGATTACAATCATATAAGTGGAAGTAGCTTACTTCTGGAGG
CCATCTTTCAGCACATCGAGCTCAAGACGTGACCAATCAGCTGCCAGGGGCCCTCCATATTTGA
GGTTCTGCCCGGGATCAGCAACCGTATTGGACGAAGTGGTGGAGACAACCACAGAAGGTGTGGT
GCTCAACATCACCGTGTTGCTGTCCATCCCACTGGAACAGTCCAGGTACACTGGCATGCCTCCT
GACCCACTAGTTGTCACGCTTGGCTGAAATGAAACAACTTGCTGGCTGCAGAATGGCTGAGGAA
ATTCACCAAAGTCTAGACTAGGATCATCTGCCATCTGCGCGCCCAGCAAATTATCTAGAACGGA
ATTTGGTATTTCCAGTTTCGAAGGACGCACTCCAAGTTGATCCAGAGCAACTCCACAATGCAGA
ATGGACGACTTTGGTACCTACTGCTCCAGGTACTCATCCAAGCATGGACTCTTTGTAACGATAC
TCAAAAAGTTTGTGTACTTCCACAATATATTGTTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.111791047
Functional Information
Coding potential Y
Potential coding position 26172561-26169815(+)
26172568-26170294(+)
26169823-26172586(-)
26172474-26172633(-)
Potential amino acid sequence MQNGRLWYLLLQVLIQAWTLCNDTQKVCVLPQYIVP*(+)
MDDFGTYCSRYSSKHGLFVTILKKFVYFHNILFPDMLAYLLQSDQEVDHFVLVIAALHDLFQWL
QLEFGCFEWHYVTQTKELLCPSELDDWYPIRKARPF*(+)
MSGNNILWKYTNFLSIVTKSPCLDEYLEQ*(-)
MADDPSLDFGEFPQPFCSQQVVSFQPSVTTSGSGGMPVYLDCSSGMDSNTVMLSTTPSVVVSTT
SSNTVADPGQNLKYGGPLAADWSRLELDVLKDGLQKYGNEQGIMKYIKIAASLPSKTVRDVAMK
CQWLGKRENSRRRKSEDHHTGRKMKERKAKMAEPSLWGTNHPVQTDTRVPSFVSHNAIQNNQIL
TGATEIDRAMQQLLVQNDRLLDQIEANMLACQGTIYCGSTQTF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017