Detail information of Os04g0553800_circ_g.1


General Information
CircRNA Name Os04g0553800_circ_g.1
ID in PlantcircBase osa_circ_024804
Alias Os_ciR9494
Organism Oryza sativa
Position chr4: 27720792-27722836  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os04g0553800
Parent gene annotation Similar to OSIGBa0143N19.10 protein. (Os04t0553800-01);Similar t
o OSIGBa0143N19.10 protein. (Os04t0553800-02);Similar to OSIGBa0
143N19.10 protein. (Os04t0553800-03)
Parent gene strand -
Alternative splicing Os04g0553800_circ_g.2 Os04g0553800_circ_g.3 Os04g0553800_circ_g.4 Os04g0553800_circ_g.5 Os04g0553800_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0553800-03:5
Os04t0553800-02:4
Os04t0553800-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGTTAAGAGTCAACTTGAATCGCATGTTGAAGTTCCCTTGTTTTTCATAAGGATTCTTCAAA
TTCTCCACAGAGACCACCTTCACACCATCATCTTTCctagtagcggatgcaccgtccgtgggat
caggaagaagggtatggtgtaagctgcaagtatggaccatgctgccactactctgagtgttgtg
agcaaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAGTAGCGGATGCACCGTCCGTGGGATCAGGAAGAAGGGTATGGTGTAAGCTGCAAGTATGGA
CCATGCTGCCACTACTCTGAGTGTTGTGAGCAAAACTATAGTACTTTTCTCCATTCTTCTGTTG
TAGCACATCTTTGACAAACTAGGCCGCGCAAGTCGGGTGACTGCAATGACTCCAATGTAAAATA
GGGCCTGGATTAATACAACCGGTAGCTCCGATGAATACCTGCTTTGCATCAAGTTTACATATAG
TCAGGAAAGGCAACACTCTGTGCTTCAGAAATTAAGATGCAACAAAATGAATACTGTTATATGC
TTCATTATCCTAAAAAACATGACAGAAGGTTGAAGACTTTGCAATCCACTACTTTATGGAACTT
TATCCTGACAAAAAAAAAGAAGCACAATAATTCCTTGCCTTGTGCAACTTTATTCTAAAATGTA
AAAGGCTCGATAATGACCTGTTACACATCTTTATTCTAAAGAAGATAGAAAGCAATTCACAAAG
GGCATTTAACCAATCACACGAGTGCACATGATACACTGTTATGGATGATATTACCATCCATGAT
CCATGCTAACAAATTTTGTACATGAAGCAATGCATTAGTGGAAGATTCTATTAACATCAGAATT
CAATCATGCAAATAAAATGCAAGACAAAATATCTGAGAAAATTACTCACCCCAAGTTTTCACGG
CGTTGTTCATGCCAAGAAAGTCCCAGAGGTAAAACTGGCCAAGACCACCAATACCATGGCTTAA
ACCATGGAGCGCTAGGAAATGTAATCACGCTGTTCGGCCCACATGGAATGCTCCAGCGGAGTTT
CAAATCTGAACAAATATCCCATTAGTCTAGGGGGAAAATGCATGAGCATACGAATTCGTATATG
TCTATTGATACTCACAATAGTAAGATGCGTCCATTTGATAGCCTAACGGAAGACGATATGTTCC
TTCAAGTTTGGTACCATTAACTGGTGGATGGAACATTGGTCGGTCAAGCAAGTCTGGGAAATAG
CTAGCAAGGAAGCCCTGATCTGCACCATCTGGGTTATCACGCCCAACAGCTAGCTCATGTAGCA
TGTTCTTAAAAACGTCCATTGAGGGCTGAAAACAAAATAGAAAGAAAAAAAAATTCATGACGAC
ATAAATTTCAATATTCAGGTTCATTTGATGAACTTTAGATGGTTCTGGACTAGAGAAAATCAGG
TTGATTAATAAGTAACAACTGGTTAGTATGACAAAAAAAATGAGTGCACAAAGTAGGAGTTGTC
ATAACCATTTTGAATTTGCCTACTGCAGAATATTGTGCCAAAAAAAACAGCAATTGGCCCGTGC
ATTAGATAGGTTTAGATTTAAGAAGTATTGTAGATTCTGTGTTTCGCGCCCCTGAAAAATACAT
CTGTGCTTTGAGAAAGGCCAACAGAAAGCTAAAGACTAATATCCAGGAAGAAAACAGATTCAAT
ATAAGCTTGCAGCTTCTAAAACCAAGCTTATTAATTTCAGGTAAAAGATTTGCAGTAAACCAGT
TGGCAACAAAACTGCATAGATCTTTTAATTAAACAATAATGAAGGATTACTTATCAAATGGCAG
TTAGATCACCCCTAATATGAAGTGCTAAACAAAACAGAATGCCTTTGTAGATGCAATGGACTAA
AGGAGGTCGATTCATAGTCATTCCTAGTAATGAAGAGATTAAGAGCTAATATCTTTCCTTACAT
GGAGAAAGTTAAAAGAAATTTTGCAGAAGAAAGGAGAAACCCATATAGCAAGTAATCCTACCTG
AAGCACAAAGAGCCCTGTATGGAAGATACAAGGGTTAATGAAGACAGCACAGAACTGGCCACAC
TGAAATAATTCATCAGTGTTCTGGAGGAAAATGTTGTCAGAGTCTAGCATAACAACTCGGTCAT
AGGAAACTAGGCTCCATGCATACAGCTTGTTAAGAGTCAACTTGAATCGCATGTTGAAGTTCCC
TTGTTTTTCATAAGGATTCTTCAAATTCTCCACAGAGACCACCTTCACACCATCATCTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.156719185
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015