Detail information of Os06g0187950_circ_g.6


General Information
CircRNA Name Os06g0187950_circ_g.6
ID in PlantcircBase osa_circ_029982
Alias Os_ciR10712
Organism Oryza sativa
Position chr6: 4440731-4440845  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os06g0187950
Parent gene annotation Hypothetical protein. (Os06t0187950-00)
Parent gene strand -
Alternative splicing Os06g0187950_circ_g.3 Os06g0187950_circ_g.4 Os06g0187950_circ_g.5
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0187950-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAACTAAGAGAAAGAGTGAGAAGATTTGTTCACTACAAGTGGCTTGCGACTAGAGgagtgga
gaataaagcaaagagatacggaagaatggatgaggcatcggcaacttcctc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 115
Transcript exons: 4440731-4440845
GAGTGGAGAATAAAGCAAAGAGATACGGAAGAATGGATGAGGCATCGGCAACTTCCTCAGAAAC
TAAGAGAAAGAGTGAGAAGATTTGTTCACTACAAGTGGCTTGCGACTAGAG

Genomic sequence GAGTGGAGAATAAAGCAAAGAGATACGGAAGAATGGATGAGGCATCGGCAACTTCCTCAGAAAC
TAAGAGAAAGAGTGAGAAGATTTGTTCACTACAAGTGGCTTGCGACTAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.542325725
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015