Detail information of Os06g0187950_circ_g.4


General Information
CircRNA Name Os06g0187950_circ_g.4
ID in PlantcircBase osa_circ_029981
Alias NA
Organism Oryza sativa
Position chr6: 4439751-4440676  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene Os06g0187950
Parent gene annotation Hypothetical protein. (Os06t0187950-00)
Parent gene strand -
Alternative splicing Os06g0187950_circ_g.3 Os06g0187950_circ_g.5 Os06g0187950_circ_g.6
Support reads 1
Tissues shoot, root
Exon boundary   No-No
Splicing signals   TC-AG
Number of exons covered Os06t0187950-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTGTTCTAGTAACTGATTTATGATTATACTAGTAAATACCATTACAACCTCTTAGCTTCAAA
GGCGTACATAATTTTCTTTAAGAAATATTGAGCTCAgtactttcatggtgtaaactccatttac
aaattgttaaaatgctttagttatgaagtaactttgttgttcatttttgatatcccattccttt
gttgtctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACTTTCATGGTGTAAACTCCATTTACAAATTGTTAAAATGCTTTAGTTATGAAGTAACTTTG
TTGTTCATTTTTGATATCCCATTCCTTTGTTGTCTGATATATAAATATTTTTTCTGAACAAATT
TCTGTATTGTAATTTTACTTGCTTTTGTCAAACTATTTTCTAGTGCCTGCCTAGATTTGGTGGT
GATACCATCATTTTCCCTCTGAACTATTAATTTCTGATTATTATTATTTTTTGCATTGCTACAA
ACTCCTTTTTTTGTTTGCCTAAAAAAAGTGCAAGCACTAGAAAATGTATGTTTGCAAGATGAAA
CGTAACTCCTTATTTCTTCGTCACTAGGGCTAGAGGGGGCTATTTTATGATGTTTTATATACAT
GCAAATTTAAAGTATTGTTTTTAAAAAGAACAGAATATATATTTATTGAGGCTTTGGGTGAGCA
TATCGCCAATACTAAGTTTGTTCATTGCAAATTGTGATTCGTTTTCTTGCTTCTATAACATTTG
ACTATGGCTTTAGGAATGGTGAAACAAATTTTTCCTGGTGTCCAATAATGGTGAACATGCATAA
AGTTTTTTTTCCCCTGTAACAATCTTATATTTTTGCACTCACGCAGCACATTCCTGGTACATTG
TATTATATTGTATTCGAACTGATGTGTGATAGTACCATAGTGGATTTAAATAGCAGATGTTTGG
GTTTTTGTCTTGAAGGAAGCTGATATAAACAAGGCTTCCAATAATATCATGCAATGCATTAATT
AGAATTGTTTTTACGAGATAACATCAACAGCTGTTTATTTGGGTATTTCTATGACCTGTTCTGT
TCTAGTAACTGATTTATGATTATACTAGTAAATACCATTACAACCTCTTAGCTTCAAAGGCGTA
CATAATTTTCTTTAAGAAATATTGAGCTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.326298137
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017