Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d019432_circ_g.6 |
ID in PlantcircBase | zma_circ_009253 |
Alias | Zm07circ00026, GRMZM2G145063_C4 |
Organism | Zea mays |
Position | chr7: 33485842-33492145 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d019432 |
Parent gene annotation |
Zn-dependent exopeptidases superfamily protein |
Parent gene strand | - |
Alternative splicing | Zm00001d019432_circ_g.1 Zm00001d019432_circ_g.2 Zm00001d019432_circ_g.3 Zm00001d019432_circ_g.4 Zm00001d019432_circ_g.5 Zm00001d019432_circ_g.7 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d019432_T007:6 Zm00001d019432_T006:6 Zm00001d019432_T002:6 Zm00001d019432_T010:6 Zm00001d019432_T004:6 Zm00001d019432_T003:6 Zm00001d019432_T008:6 Zm00001d019432_T009:6 Zm00001d019432_T005:5 Zm00001d019432_T011:6 Zm00001d019432_T001:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.099654976 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
33492036-33485850(+) 33487833-33492122(-) 33487651-33491449(-) |
Potential amino acid sequence |
MIEITTENKNYIKSWNVCNVFSKYSIICITWNYSKHIHSY*(+) MGSAQSQEKMNGTPYVWCNPCNIYSCSGCSIKIIIHKECNELVCSPLFGVPNVCPYFIDWSIAA KAYMGAIGASTLLGCFWVVFFNNYGYVWNNSR*(-) MVLHTFGVILAIFIPALAAALRLLFTKNAMNWFAHPYLAFLMFVPTSLIGLLLPRLTWGLSEQA HFWGAFGLYSLITMDMFGIIPGDTDYRIFAEDITNIPGLDIIFVLGGYFYHTSYDTLENLLPGS IQARGENLFNLVKAFTNPMLLKENEISNKAAKDGIEDVGAVFFDYLTWFMVFYSRDISLILHSL PIAIFLLVPLFLKFPNITLMSWFVTLLGFMRGKTEMWNVH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |