Detail information of Os12g0162100_circ_g.1


General Information
CircRNA Name Os12g0162100_circ_g.1
ID in PlantcircBase osa_circ_010534
Alias Os12circ00876/Os_ciR359
Organism Oryza sativa
Position chr12: 3128930-3130862  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene Os12g0162100
Parent gene annotation Similar to cDNA clone:J033067N18, full insert sequence. (Os12t01
62100-01);Similar to MAP kinase-like protein. (Os12t0162100-02)
Parent gene strand -
Alternative splicing Os12g0162100_circ_g.2 Os12g0162100_circ_g.3 Os12g0162100_circ_g.4 Os12g0162100_circ_g.5 Os12g0162100_circ_g.6 Os12g0162100_circ_g.7 Os12g0162100_circ_g.8 Os12g0162100_circ_g.9 Os12g0162100_circ_g.10 Os12g0162100_circ_g.11 Os12g0162100_circ_g.12 Os12g0162100_circ_g.13 Os12g0162100_circ_g.14
Support reads 2/99
Tissues leaf and panicle/root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0162100-02:5
Os12t0162100-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGTTGCTTCATCTTCTTAGAGGACCCCATGACAGAGTCATCGATCCGGGATTGGCTCCATGCT
ACCTCGACACCCTCCAGCTTATCGAAGGCTTTGTAGataaccagcgaagccaactatgactatt
agttagtagcagcggttggggaagcagaatcactctcggtcagcgcttctcaattgtcaagccg
tttgcacc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 157
Transcript exons: 3128930-3128991,3130768-3130862
ATAACCAGCGAAGCCAACTATGACTATTAGTTAGTAGCAGCGGTTGGGGAAGCAGAATCACTGC
TTCATCTTCTTAGAGGACCCCATGACAGAGTCATCGATCCGGGATTGGCTCCATGCTACCTCGA
CACCCTCCAGCTTATCGAAGGCTTTGTAG

Transcript length: 183
Transcript exons: 3128930-3129017,3130768-3130862
ATAACCAGCGAAGCCAACTATGACTATTAGTTAGTAGCAGCGGTTGGGGAAGCAGAATCACTCT
CGGTCAGCGCTTCTCAATTGTCAAGCTTCATCTTCTTAGAGGACCCCATGACAGAGTCATCGAT
CCGGGATTGGCTCCATGCTACCTCGACACCCTCCAGCTTATCGAAGGCTTTGTAG

Transcript length: 187
Transcript exons: 3128930-3129018,3130765-3130862
ATAACCAGCGAAGCCAACTATGACTATTAGTTAGTAGCAGCGGTTGGGGAAGCAGAATCACTCT
CGGTCAGCGCTTCTCAATTGTCAAGGTTGCTTCATCTTCTTAGAGGACCCCATGACAGAGTCAT
CGATCCGGGATTGGCTCCATGCTACCTCGACACCCTCCAGCTTATCGAAGGCTTTGTAG

Transcript length: 223
Transcript exons: 3128930-3129088,3130799-3130862
ATAACCAGCGAAGCCAACTATGACTATTAGTTAGTAGCAGCGGTTGGGGAAGCAGAATCACTCT
CGGTCAGCGCTTCTCAATTGTCAAGCCGTTTGCACCCTCAGAAACCACCTGACGGATGGCGACA
CACGGTGTCCATTCAGGAATCAGGATGACCAGTCATCGATCCGGGATTGGCTCCATGCTACCTC
GACACCCTCCAGCTTATCGAAGGCTTTGTAG

Transcript length: 254
Transcript exons: 3128930-3129026,3130706-3130862
ATAACCAGCGAAGCCAACTATGACTATTAGTTAGTAGCAGCGGTTGGGGAAGCAGAATCACTCT
CGGTCAGCGCTTCTCAATTGTCAAGCCGTTTGCAAACATTTTCTCAATGTTCTTATGCTTGAGT
GTCTTCAAAAGTTGAATCTCTGTGTTTAGTTGCTTCATCTTCTTAGAGGACCCCATGACAGAGT
CATCGATCCGGGATTGGCTCCATGCTACCTCGACACCCTCCAGCTTATCGAAGGCTTTGTAG

Transcript length: 272
Transcript exons: 3128930-3129018,3130680-3130862
ATAACCAGCGAAGCCAACTATGACTATTAGTTAGTAGCAGCGGTTGGGGAAGCAGAATCACTCT
CGGTCAGCGCTTCTCAATTGTCAAGTTCTTCTCCCCATCAACCCATGAAGCAAACATTTTCTCA
ATGTTCTTATGCTTGAGTGTCTTCAAAAGTTGAATCTCTGTGTTTAGTTGCTTCATCTTCTTAG
AGGACCCCATGACAGAGTCATCGATCCGGGATTGGCTCCATGCTACCTCGACACCCTCCAGCTT
ATCGAAGGCTTTGTAG

Transcript length: 282
Transcript exons: 3128930-3129078,3130730-3130862
ATAACCAGCGAAGCCAACTATGACTATTAGTTAGTAGCAGCGGTTGGGGAAGCAGAATCACTCT
CGGTCAGCGCTTCTCAATTGTCAAGCCGTTTGCACCCTCAGAAACCACCTGACGGATGGCGACA
CACGGTGTCCATTCAGGAATCCTTGAGTGTCTTCAAAAGTTGAATCTCTGTGTTTAGTTGCTTC
ATCTTCTTAGAGGACCCCATGACAGAGTCATCGATCCGGGATTGGCTCCATGCTACCTCGACAC
CCTCCAGCTTATCGAAGGCTTTGTAG

Transcript length: 402
Transcript exons: 3128930-3129110,3130632-3130758,3130769-3130862
ATAACCAGCGAAGCCAACTATGACTATTAGTTAGTAGCAGCGGTTGGGGAAGCAGAATCACTCT
CGGTCAGCGCTTCTCAATTGTCAAGCCGTTTGCACCCTCAGAAACCACCTGACGGATGGCGACA
CACGGTGTCCATTCAGGAATCAGGATGACCAAGAATGCATCGATCAACTGCGCTGTGTCAAGCT
CCCGGATGTGAACAACTCTGTGATTATGTTAACAGTCTTCTTCTCCCCATCAACCCATGAAGCA
AACATTTTCTCAATGTTCTTATGCTTGAGTGTCTTCAAAAGTTGAATCTCTGCTTCATCTTCTT
AGAGGACCCCATGACAGAGTCATCGATCCGGGATTGGCTCCATGCTACCTCGACACCCTCCAGC
TTATCGAAGGCTTTGTAG

Genomic sequence ATAACCAGCGAAGCCAACTATGACTATTAGTTAGTAGCAGCGGTTGGGGAAGCAGAATCACTCT
CGGTCAGCGCTTCTCAATTGTCAAGCCGTTTGCACCCTCAGAAACCACCTGACGGATGGCGACA
CACGGTGTCCATTCAGGAATCAGGATGACCAAGAATGCATCGATCAACTGCGCGATGATCGGTC
TGCTGTCTTGTGTCAGTCCAAATTGCTCAACCATTTCCACAGCCACAGAAAGACTTGTATCTTC
AGTCAAATTGAATGGGAATTCAACACTCTTGAAACAACCTGAAAGGAAGTTGATGTTCAGTACA
AAACGTGTTGTTGAATTCTGGAAAAGAAAGATTTCAAACAATATGATTACCGCTGGGATCAGGA
AATCTTAGCCATAAATCAACATGGCTGGCTACATCAACATTTCCTGTCAGCAGAAACTCGCCCT
TACGAAGCATGCAACTGACAGGCTGCTGCCCATCTTCAGACATATTCTTGACCAGAGAGACTGA
GATAAGATCATCATCCTGGAGGAAAGAGCTTTTCAACAGCTCTGTTGCAGACATTCTGTTCTCT
ACTGGAGCTAAACAGTTCTCTATGAAAGATCTTACTTCTGCATCTTTAATTTTGTAGAACGCAG
CTGGTTTCTTACCCTATATCAAATAGGTCATACAAACAAAAAGTTAAGTTGTTGGCTACTACAA
TCACTCTGGTATCTGTAGACATCAAGACCTTACCTCATCAATCTTTTTGAATATATGGGCCATG
CCTTGACATTCACTGTATGGGTATTCGCATGTCACCATTTCAAGCATGCACATCCCAAATGAAT
ATATATCAACCAATTCATTGTAATGCCCAGTTAACAGCTCTGGTGCCATAAATTCTAAGGTGCC
TGCAGTTAATGATTAATATATCCTTATTACACATCCAACTGAAAGAGAAATCCTTTTTAAGATG
AAAAGAAAACAGAATTATATGAGTCAAGAAAATTGGTAACATAAGTTTAAAAGTGGACATACAT
GCTAAATAGAATAGTTATGTTCTGAGAAAACTGTAACAGTTAGAAAACACATAAGATGGCAGAC
ATATAACAATGTTGATATGAGATATCTACCTTTTATACTTTTTTTCTGTTGCTGCATGAATGTT
GCCAAACCAAAATCACCAATCTTCACTTTCCCATGATTTCCATTTATGAATATATTGTCACATT
TTAAATCCCTGTGTATAATTGCTGGCTTCTGACTGTGCAGATATTCTAGCCCTGTTAATATCTG
TATTGCCCATCGTTTCATAGCCTTCATATTCACTTTCTTGTGCTTTCTGCGGTACCTGGTTACA
TGGTGACATAAAAAAGGTTACATTGTAATTTATAAGGTAAAAGAAACGCAGTATCCCTCTTGAA
GTTTTAGGGTAAATAATTTTAAGCAACGCTCATCTAGTCATCTATACTGAATTAAAGGGCGGTA
CAAACAAATGACAATGAAAAGGAAAAGTTACCAAATATTATCCAAGAATTGTAAAGGAGCCAAC
TAAAACTTTAATTTGCACAATGGAAAACTGTAAAAATGTTCAGGTAGCACTAATTCAGTAAAAA
AAAGGTATATTTAGAAGATAGATATCCAAACCAATGAATAGGCAACAGTTTATTAATATGCTCC
AGCTGACAGCATAGTTGTCGTAAGGATGAGGGGCATACTGTGTCAAGCTCCCGGATGTGAACAA
CTCTGTGATTATGTTAACAGTCTTCTTCTCCCCATCAACCCATGAAGCAAACATTTTCTCAATG
TTCTTATGCTTGAGTGTCTTCAAAAGTTGAATCTCTGTGTTTAGTTGCTTCATCTTCTTAGAGG
ACCCCATGACAGAGTCATCGATCCGGGATTGGCTCCATGCTACCTCGACACCCTCCAGCTTATC
GAAGGCTTTGTAG
Conservation Information
Conserved circRNAs osi_circ_010100
PMCS 0.380968413
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015