Detail information of Os12g0162100_circ_g.12


General Information
CircRNA Name Os12g0162100_circ_g.12
ID in PlantcircBase osa_circ_010544
Alias NA
Organism Oryza sativa
Position chr12: 3130891-3131371  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os12g0162100
Parent gene annotation Similar to cDNA clone:J033067N18, full insert sequence. (Os12t01
62100-01);Similar to MAP kinase-like protein. (Os12t0162100-02)
Parent gene strand -
Alternative splicing Os12g0162100_circ_g.1 Os12g0162100_circ_g.2 Os12g0162100_circ_g.3 Os12g0162100_circ_g.4 Os12g0162100_circ_g.5 Os12g0162100_circ_g.6 Os12g0162100_circ_g.7 Os12g0162100_circ_g.8 Os12g0162100_circ_g.9 Os12g0162100_circ_g.10 Os12g0162100_circ_g.11 Os12g0162100_circ_g.13 Os12g0162100_circ_g.14
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   AC-AT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAATCGAATTATATTCCACAACTAATTCAATCGTGATAATTCAATCAAGAACAAAAAGGGCTA
AACTAGAAACAGCACATGAGATTGATGAAAGGATACgatatgaacaatataattttgtcccacc
agcatgagacattcaggttgtgaaacccgaattaaagaaacactggaacatcttgaatcagcca
agaataaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 481
Transcript exons: 3130891-3131371
GATATGAACAATATAATTTTGTCCCACCAGCATGAGACATTCAGGTTGTGAAACCCGAATTAAA
GAAACACTGGAACATCTTGAATCAGCCAAGAATAAATAAACTTGAAATTTGTCACACTTTATCC
ATAATAGAAGTACAGATGGTTAGCAGAACTAAATATTTATGGATTAACATCTTTCCATGAATAT
ATATCAAGGTTAATAAGGTCAACACCGATCAATAATTTTAGCCACAGATTACAGAAGCATGAAA
AGTTCGGTTCCATCTCTGAATGTGTCTGTAGATTCTACATGGAATCGCGGGTGTCCATCATAAG
TTCAGAACACATCTAATACTGATAAATAAATAATCATCGGGCATGGTTCTACTGTGATCAACAA
ATCGAATTATATTCCACAACTAATTCAATCGTGATAATTCAATCAAGAACAAAAAGGGCTAAAC
TAGAAACAGCACATGAGATTGATGAAAGGATAC

Genomic sequence GATATGAACAATATAATTTTGTCCCACCAGCATGAGACATTCAGGTTGTGAAACCCGAATTAAA
GAAACACTGGAACATCTTGAATCAGCCAAGAATAAATAAACTTGAAATTTGTCACACTTTATCC
ATAATAGAAGTACAGATGGTTAGCAGAACTAAATATTTATGGATTAACATCTTTCCATGAATAT
ATATCAAGGTTAATAAGGTCAACACCGATCAATAATTTTAGCCACAGATTACAGAAGCATGAAA
AGTTCGGTTCCATCTCTGAATGTGTCTGTAGATTCTACATGGAATCGCGGGTGTCCATCATAAG
TTCAGAACACATCTAATACTGATAAATAAATAATCATCGGGCATGGTTCTACTGTGATCAACAA
ATCGAATTATATTCCACAACTAATTCAATCGTGATAATTCAATCAAGAACAAAAAGGGCTAAAC
TAGAAACAGCACATGAGATTGATGAAAGGATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.232439224
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017