Detail information of Niben101Scf01587g02009_circ_g.1


General Information
CircRNA Name Niben101Scf01587g02009_circ_g.1
ID in PlantcircBase nbe_circ_000581
Alias NA
Organism Nicotiana benthamiana
Position chrNiben101Scf01587: 275521-280086  JBrowse»
Reference genome Niben.genome.v1.0.1
Type   e-circRNA
Identification method DCC
Parent gene Niben101Scf01587g02009
Parent gene annotation NA
Parent gene strand +
Alternative splicing Niben101Scf01587g02009_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-GG
Number of exons covered Niben101Scf01587g02009.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGAGAATCGCGCTGCTGAAGTTTCTCTTTCTTCATCATCTTCACAAATTGCTCAAAGCAATGC
AGTTTCCGAAACTGGAAAGAATGATTTGGCAACAAAttggtttatctacatgagcaaggtgtaa
ttcatagggatatcaagggtgcaaatatattgacaactaaagaggtttttaatcgcaccccctt
ttctaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGGTTTATCTACATGAGCAAGGTGTAATTCATAGGGATATCAAGGGTGCAAATATATTGACAA
CTAAAGAGGTTTTTAATCGCACCCCCTTTTCTAATTTTGCTACATTCATGCAGGGAAATTCCTA
CTCTCTTTGTTGCATTTTTTGTGGCTTTATTACTATTTGGGTAGTTAGAGAAAGGTTTTGTTGT
TTCTTTGACCACAATTTTCTTATTTTTTAAAATAAATATTTTGATTTATTAACTATAGGGACTA
GTATTTCTTTTTACGTAGTTCCACAATACGAAATTTTTTACTTAAAAAACTCAAAAGAATCTTT
ATCCGAATTCAGACTGAAACTTAAGTAGTTTGACCCTCGTATTCCGAAACCCGCCACATAAAAT
GATATGACTGGAGTAATTAGTTATTTTCTCATTGTGCTATTATCTGGTTTCTTTTGTCCCTTGT
TTAGGAGAAAGAAGTTTAATGAGTTCTATAACTTCATGGCTAATTACTTGAATTTCCAATCTCA
TTGTTACTATCCATTCCCATTTGGATTATAAAATCAGCTCAAGTAAACTTTTGCTGACGTGTGT
GTTTGCCTTTCCTTTTTTTTTTCTTGATAATTCTTGTTTTGCAGGGTTTGGTGAAACTTGCTGA
TTTTGGCGTTGCAACAAAGTTGACAGAGGCAGATGTTAATACACACTCAGTTGTTGGAACACCA
TATTGGATGGCACCTGAGGTGTTGAAAACTTATTTTGCGTGGTGTCTATATTTGGATTGACATT
TTGTTTTTCTTTCTTGTCTGTTATTCACCTCTGAAAGGGAAGAGAACTTTATTTGAATTAGTTA
TTGACTAGCTGTTGCGTAGCTGAGATTTCTAACTTGTACATTAACTCATGCACATGGTGTTCAT
CAGAAGGAAATCAAGTACAACTAAAAGTTTTGAGTATCTTAGCTCGACTTATTTTACCGTTGTA
AGAAGCCACCTTTAAAATGCATAACTCAGCATGTCAATGTGATGTGTTGAAAGTATGTATATGT
TTGCAAGCTTTTTGGTTTGACCTGCTTATTGTACATGATGAAGTTGGATTTCTAGATACAATAG
AGGGACTACACATTTTGTAATTATGACTTTTAGCACTGGCTTACTGCAAGTATTTATAAATCTT
CGATCACTTATAAAAAAAGGGACTGCCGGAATTATGGGAATTGTGTCAAAAGTATGAAGACAAA
AGTATAGCCCTGTCTAAATGTATAGGGATTCTAGGAGCTGTAGAATAGATTCAGCTTCATTTGC
CAGTTCCATTCTACACCAACAGTAAAATAAAAAGTGCCGCTGTCCTTTATCCTCCGGATGTGAT
TGTGCTCATCTTCAAAGCATCTCAAGTTCCTTTCTTTCCAAACAGTCCACCAGATTCAAGCTGG
TGTAGTGTTGAAGTTCCAAAATAATTAAAAAATCTGAAAGTAGACTTTCTTCTTCTGGAAAAGA
ATGCTAAACCACCCAAAAAGCAAATAGTTTGAATGGACAGTTCACTGGTTATTAAAGGAAAGAA
AATGGGATTTGTTGAAATATTCTGCTGGTTATATTAGTGATAGCAGAAACTTGCACCTAGAAGA
TCTATCCTTAATGCTTTCTGGTGTTTCAGGTGATTGAAATGTCGGGAGTATGTGCTGCATCTGA
CATCTGGAGTGTTGGCTGTACAGTTATAGAACTACTTACTTGTGTACCTCCCTACTATGATCTT
CAGCCCATGCCTGCTCTCTTTCGGATTGTACAGGTGAGTTTTAGTTAGGCTATGTCTTTTTGTC
TTTACGTATGAGGAAGACGAGGATAATATTTTGAGTTAAGGTAGTGGTGATATTCCTTATTCCA
CTAGCTTGAATCAAATGCTACTGAGTGGTTAAGATCTGCTTTTACGATCTTCATCGATTTAATG
GATCCTTGTCTATTTCCAGGATGATCATCCCCCAATTCCAGACAGCCTTTCTCCTGCTATCACT
GATTTTCTGCGTCAGTGTTTTAAGAAGGTAATAGAATATATTAATCCTGCATCAATTAAGTCTT
GGTACTTGATATTTTCTAGTTGATTGGCTTAAAGAGGCAAAAGGGAGACAGTTGTGCGTTTGGA
TTGGGAAGATATGAGAACTTACAGGTGAAATGACCTAAGTTGTTTACTCTCACATTTATAATGC
TCAAAGGATGATGATAGTCTGATGTTGGACGTGGATCTAATAGAACTACAAGTTCAGCGGCCTC
TATATAATTGGCATTTTTAAGTAATGGAGTTCTATAATATTGTTAGAATTTGGAGGTGTGCATG
ATGAACAATATGAGGCTTTTTGGCAGGCATGGTTGATGTTGTAATGAGGAGAATCTTCCACTAC
ATTTTCTGACTTTAGTGTAGTTGCAGAAATCCATCCAAATATTTTGTTAAATGGAAACTTGAAG
CTTTAGATACCTTGAAGATTGATAATTTTTATGATTTTGTCTTCTCGCTAGTTTATCCCTTGAC
TACTCCAATAGATTTTGGTAACTATAGATTAGCGTGTTTCAGGATGCTAGACAAAGGCCTGATG
CTAAGACACTACTTTCACATCCATGGATACAAAACTCAAGGCGTGCTTTGCAGTCCTCACTCCG
TCATAGTGGGACGCTAAGGTAGATTTTGTAATATACTCTTAGCTTTTCTTTGATAATTGAGAAA
TCTCCGAGGGTTCAGTGGCACACAGTTCGAGACACAGTGGATAATGGGCCCGCCCCTCTACACT
TGACAATTAAATGCCAGGTTCTTATCTTATCTGTGTTAGGGTTCGAACCCATGACTTGCATTCA
ATCTACACATCAGGGGCTGCGATCGGGCCACTAGACCTAGCCTCGGAAATCGTAAAGCACTCCT
AGTCATCATTAGTCTAGTACTTTTCCTCTGGGATTCCCCCTAGATATCCGTTCTATGACAGTAT
AGTTTTTTGATCCACACCATATTTTTCTTGCATTTGTTATCTTTTAGAAATATAGAAGAAGATG
GATCGGCTGATACAGATGCATCAAATGAAGATGATAAGGGTGCTGCTGGAAGCTCTTCTTCGGA
CAAAGCAAAAGTATTTTTCTTTGGTGTTTCTTTAATATGATGAAAATATCAATTAAGCAATATA
GTGATACTCTCCGAATCCAGGAATCTTGTTCAGTGTTGGCATCACCTGAAGTCTCGGAGATTAG
CAAGTCAGAAGAGTTTGATGGCTCAACTAGTAGTCACTTAGAAGGAAGAACTGATAATATTGAA
GATCAATTTACGTCAGATCAAGTTCCAACTTTAGCAATCCATGAGAAGTCTCTCATTCAAAGCT
GTGCTGATGGATTGGCTGTGAATAATGAATCAACGCTTCAAAGTTCAACAGACTTGGTTGAGCC
TGAGAAAGTTCTTGCAAACGGTGAGCTTGAATCTAGTGAATCCAAGGGTGGAAATAATGTAGGT
AAGAAGGTTGAAGAACAAGGACGCGGCATTAATGCTTATTCTGCATCATCCAGTTCTGGACAAA
AGAACCCAGATCATAGTCCTAGAAAGGTAAAGTTTATGCTTATAATTCTTAATGTTGATTTCTT
AATGTCATTGCCAAAGAAATCACTACAGGATTCCTAATGTTTTTTGCTTGAAATATACTTTTGA
TGAGGTGTTCTTTTTTGCATCTATTGAATGCATATCAATAAATACACTTCTTTGAGGAAAATGT
AGAGGATATGCTTATAATTGATATTTTCTTTTTGCTGCTTGCTGAACAAGATCCTTCTTTTTTA
ATGTTAGAAAATTAGTAAACAAGTCTTTAGTATTTAGCTGTCATAAGCTGGAGATGGTAACTTT
TACACCTCTTGTGTTATAGGTATAATCCAGTTATGACCTTTTCTTTTGTTGTATGTTATCTATG
CAAATGGGATGATTTTGATGTCAGTTATCAAGTCTAATTGGTGGAACCATGTTGGTGTGACTAA
CTTCATCACTAATCCAGGTTTTTCGTGTTATGAATAGTAGTTTATAGGAAGAGGTTGGTAAGTC
CATGTCCTGCCTGAGCTCAGAGTTCTAGTTTGAAAAGAATATTTATCTATGGTTTCGGGGTATT
CACTTGTTTTTGTTTCTATAATTTCATCCATGTTATGGACGTTCATCTCACGCTGGTTACTGTT
AGTGGATTGATTTTTTTTTTTTTTTTGGCAAGATCATCTCTGATCTATTTTGAAGCTCAACTCT
GCTTGTGTTTCTTTGCTCCTTTATGTCTTTTGCACTGCATCAAACGTTACTCAATGTTCTTGTG
TCGTCTATTTAGCTGCTTGTTATTTTATGCTGAATCATATTCGTATGTATTCTTATTTGAAAAT
TTGTGAAGGCTGTGAAGACATCAGTAGTTCCACGAGGAAATGAACTGAGCAGATTTAGTGACCC
CCCTGGTGATGCTTCGTTGGATGACCTGTTTCATCCATTGGAGAAGAACCTGGAGAATCGCGCT
GCTGAAGTTTCTCTTTCTTCATCATCTTCACAAATTGCTCAAAGCAATGCAGTTTCCGAAACTG
GAAAGAATGATTTGGCAACAAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019