Detail information of Niben101Scf01587g02009_circ_g.2


General Information
CircRNA Name Niben101Scf01587g02009_circ_g.2
ID in PlantcircBase nbe_circ_000582
Alias NA
Organism Nicotiana benthamiana
Position chrNiben101Scf01587: 275525-280090  JBrowse»
Reference genome Niben.genome.v1.0.1
Type   e-circRNA
Identification method DCC
Parent gene Niben101Scf01587g02009
Parent gene annotation NA
Parent gene strand +
Alternative splicing Niben101Scf01587g02009_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   AG-GG
Number of exons covered Niben101Scf01587g02009.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAATCGCGCTGCTGAAGTTTCTCTTTCTTCATCATCTTCACAAATTGCTCAAAGCAATGCAGTT
TCCGAAACTGGAAAGAATGATTTGGCAACAAAGTTGtttatctacatgagcaaggtgtaattca
tagggatatcaagggtgcaaatatattgacaactaaagaggtttttaatcgcacccccttttct
aattttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTATCTACATGAGCAAGGTGTAATTCATAGGGATATCAAGGGTGCAAATATATTGACAACTAA
AGAGGTTTTTAATCGCACCCCCTTTTCTAATTTTGCTACATTCATGCAGGGAAATTCCTACTCT
CTTTGTTGCATTTTTTGTGGCTTTATTACTATTTGGGTAGTTAGAGAAAGGTTTTGTTGTTTCT
TTGACCACAATTTTCTTATTTTTTAAAATAAATATTTTGATTTATTAACTATAGGGACTAGTAT
TTCTTTTTACGTAGTTCCACAATACGAAATTTTTTACTTAAAAAACTCAAAAGAATCTTTATCC
GAATTCAGACTGAAACTTAAGTAGTTTGACCCTCGTATTCCGAAACCCGCCACATAAAATGATA
TGACTGGAGTAATTAGTTATTTTCTCATTGTGCTATTATCTGGTTTCTTTTGTCCCTTGTTTAG
GAGAAAGAAGTTTAATGAGTTCTATAACTTCATGGCTAATTACTTGAATTTCCAATCTCATTGT
TACTATCCATTCCCATTTGGATTATAAAATCAGCTCAAGTAAACTTTTGCTGACGTGTGTGTTT
GCCTTTCCTTTTTTTTTTCTTGATAATTCTTGTTTTGCAGGGTTTGGTGAAACTTGCTGATTTT
GGCGTTGCAACAAAGTTGACAGAGGCAGATGTTAATACACACTCAGTTGTTGGAACACCATATT
GGATGGCACCTGAGGTGTTGAAAACTTATTTTGCGTGGTGTCTATATTTGGATTGACATTTTGT
TTTTCTTTCTTGTCTGTTATTCACCTCTGAAAGGGAAGAGAACTTTATTTGAATTAGTTATTGA
CTAGCTGTTGCGTAGCTGAGATTTCTAACTTGTACATTAACTCATGCACATGGTGTTCATCAGA
AGGAAATCAAGTACAACTAAAAGTTTTGAGTATCTTAGCTCGACTTATTTTACCGTTGTAAGAA
GCCACCTTTAAAATGCATAACTCAGCATGTCAATGTGATGTGTTGAAAGTATGTATATGTTTGC
AAGCTTTTTGGTTTGACCTGCTTATTGTACATGATGAAGTTGGATTTCTAGATACAATAGAGGG
ACTACACATTTTGTAATTATGACTTTTAGCACTGGCTTACTGCAAGTATTTATAAATCTTCGAT
CACTTATAAAAAAAGGGACTGCCGGAATTATGGGAATTGTGTCAAAAGTATGAAGACAAAAGTA
TAGCCCTGTCTAAATGTATAGGGATTCTAGGAGCTGTAGAATAGATTCAGCTTCATTTGCCAGT
TCCATTCTACACCAACAGTAAAATAAAAAGTGCCGCTGTCCTTTATCCTCCGGATGTGATTGTG
CTCATCTTCAAAGCATCTCAAGTTCCTTTCTTTCCAAACAGTCCACCAGATTCAAGCTGGTGTA
GTGTTGAAGTTCCAAAATAATTAAAAAATCTGAAAGTAGACTTTCTTCTTCTGGAAAAGAATGC
TAAACCACCCAAAAAGCAAATAGTTTGAATGGACAGTTCACTGGTTATTAAAGGAAAGAAAATG
GGATTTGTTGAAATATTCTGCTGGTTATATTAGTGATAGCAGAAACTTGCACCTAGAAGATCTA
TCCTTAATGCTTTCTGGTGTTTCAGGTGATTGAAATGTCGGGAGTATGTGCTGCATCTGACATC
TGGAGTGTTGGCTGTACAGTTATAGAACTACTTACTTGTGTACCTCCCTACTATGATCTTCAGC
CCATGCCTGCTCTCTTTCGGATTGTACAGGTGAGTTTTAGTTAGGCTATGTCTTTTTGTCTTTA
CGTATGAGGAAGACGAGGATAATATTTTGAGTTAAGGTAGTGGTGATATTCCTTATTCCACTAG
CTTGAATCAAATGCTACTGAGTGGTTAAGATCTGCTTTTACGATCTTCATCGATTTAATGGATC
CTTGTCTATTTCCAGGATGATCATCCCCCAATTCCAGACAGCCTTTCTCCTGCTATCACTGATT
TTCTGCGTCAGTGTTTTAAGAAGGTAATAGAATATATTAATCCTGCATCAATTAAGTCTTGGTA
CTTGATATTTTCTAGTTGATTGGCTTAAAGAGGCAAAAGGGAGACAGTTGTGCGTTTGGATTGG
GAAGATATGAGAACTTACAGGTGAAATGACCTAAGTTGTTTACTCTCACATTTATAATGCTCAA
AGGATGATGATAGTCTGATGTTGGACGTGGATCTAATAGAACTACAAGTTCAGCGGCCTCTATA
TAATTGGCATTTTTAAGTAATGGAGTTCTATAATATTGTTAGAATTTGGAGGTGTGCATGATGA
ACAATATGAGGCTTTTTGGCAGGCATGGTTGATGTTGTAATGAGGAGAATCTTCCACTACATTT
TCTGACTTTAGTGTAGTTGCAGAAATCCATCCAAATATTTTGTTAAATGGAAACTTGAAGCTTT
AGATACCTTGAAGATTGATAATTTTTATGATTTTGTCTTCTCGCTAGTTTATCCCTTGACTACT
CCAATAGATTTTGGTAACTATAGATTAGCGTGTTTCAGGATGCTAGACAAAGGCCTGATGCTAA
GACACTACTTTCACATCCATGGATACAAAACTCAAGGCGTGCTTTGCAGTCCTCACTCCGTCAT
AGTGGGACGCTAAGGTAGATTTTGTAATATACTCTTAGCTTTTCTTTGATAATTGAGAAATCTC
CGAGGGTTCAGTGGCACACAGTTCGAGACACAGTGGATAATGGGCCCGCCCCTCTACACTTGAC
AATTAAATGCCAGGTTCTTATCTTATCTGTGTTAGGGTTCGAACCCATGACTTGCATTCAATCT
ACACATCAGGGGCTGCGATCGGGCCACTAGACCTAGCCTCGGAAATCGTAAAGCACTCCTAGTC
ATCATTAGTCTAGTACTTTTCCTCTGGGATTCCCCCTAGATATCCGTTCTATGACAGTATAGTT
TTTTGATCCACACCATATTTTTCTTGCATTTGTTATCTTTTAGAAATATAGAAGAAGATGGATC
GGCTGATACAGATGCATCAAATGAAGATGATAAGGGTGCTGCTGGAAGCTCTTCTTCGGACAAA
GCAAAAGTATTTTTCTTTGGTGTTTCTTTAATATGATGAAAATATCAATTAAGCAATATAGTGA
TACTCTCCGAATCCAGGAATCTTGTTCAGTGTTGGCATCACCTGAAGTCTCGGAGATTAGCAAG
TCAGAAGAGTTTGATGGCTCAACTAGTAGTCACTTAGAAGGAAGAACTGATAATATTGAAGATC
AATTTACGTCAGATCAAGTTCCAACTTTAGCAATCCATGAGAAGTCTCTCATTCAAAGCTGTGC
TGATGGATTGGCTGTGAATAATGAATCAACGCTTCAAAGTTCAACAGACTTGGTTGAGCCTGAG
AAAGTTCTTGCAAACGGTGAGCTTGAATCTAGTGAATCCAAGGGTGGAAATAATGTAGGTAAGA
AGGTTGAAGAACAAGGACGCGGCATTAATGCTTATTCTGCATCATCCAGTTCTGGACAAAAGAA
CCCAGATCATAGTCCTAGAAAGGTAAAGTTTATGCTTATAATTCTTAATGTTGATTTCTTAATG
TCATTGCCAAAGAAATCACTACAGGATTCCTAATGTTTTTTGCTTGAAATATACTTTTGATGAG
GTGTTCTTTTTTGCATCTATTGAATGCATATCAATAAATACACTTCTTTGAGGAAAATGTAGAG
GATATGCTTATAATTGATATTTTCTTTTTGCTGCTTGCTGAACAAGATCCTTCTTTTTTAATGT
TAGAAAATTAGTAAACAAGTCTTTAGTATTTAGCTGTCATAAGCTGGAGATGGTAACTTTTACA
CCTCTTGTGTTATAGGTATAATCCAGTTATGACCTTTTCTTTTGTTGTATGTTATCTATGCAAA
TGGGATGATTTTGATGTCAGTTATCAAGTCTAATTGGTGGAACCATGTTGGTGTGACTAACTTC
ATCACTAATCCAGGTTTTTCGTGTTATGAATAGTAGTTTATAGGAAGAGGTTGGTAAGTCCATG
TCCTGCCTGAGCTCAGAGTTCTAGTTTGAAAAGAATATTTATCTATGGTTTCGGGGTATTCACT
TGTTTTTGTTTCTATAATTTCATCCATGTTATGGACGTTCATCTCACGCTGGTTACTGTTAGTG
GATTGATTTTTTTTTTTTTTTTGGCAAGATCATCTCTGATCTATTTTGAAGCTCAACTCTGCTT
GTGTTTCTTTGCTCCTTTATGTCTTTTGCACTGCATCAAACGTTACTCAATGTTCTTGTGTCGT
CTATTTAGCTGCTTGTTATTTTATGCTGAATCATATTCGTATGTATTCTTATTTGAAAATTTGT
GAAGGCTGTGAAGACATCAGTAGTTCCACGAGGAAATGAACTGAGCAGATTTAGTGACCCCCCT
GGTGATGCTTCGTTGGATGACCTGTTTCATCCATTGGAGAAGAACCTGGAGAATCGCGCTGCTG
AAGTTTCTCTTTCTTCATCATCTTCACAAATTGCTCAAAGCAATGCAGTTTCCGAAACTGGAAA
GAATGATTTGGCAACAAAGTTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019