Detail information of Os04g0375900_circ_g.1


General Information
CircRNA Name Os04g0375900_circ_g.1
ID in PlantcircBase osa_circ_023535
Alias NA
Organism Oryza sativa
Position chr4: 18361908-18365160  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os04g0375900
Parent gene annotation Kinesin, motor region domain containing protein. (Os04t0375900-0
1)
Parent gene strand -
Alternative splicing Os04g0375900_circ_g.2 Os04g0375900_circ_g.3 Os04g0375900_circ_g.4
Support reads 1
Tissues seed
Exon boundary   No-No
Splicing signals   CC-CA
Number of exons covered Os04t0375900-01:14
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTGATAGGATGAGACAGTGACAGCGGCACCAATGGCTTTGGAGGAGTCGAGGAGTTGCGCCA
TTGCCATGGTGAACAAGCCAGGTTGATCAGGAGACCcctctttaaatagctctggtgactcctc
acgaagctcaagtatgtagtttgcccttttatctccgattccctacacatgtatcagtgggtta
atggtaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCTTTAAATAGCTCTGGTGACTCCTCACGAAGCTCAAGTATGTAGTTTGCCCTTTTATCTCC
GATTCCCTACACATGTATCAGTGGGTTAATGGTAAGAAAGAAGCAATCTGGGCTGCCACAATAT
GATTCAGAGCAAACCTTTAAGCTTTTTAATTGCTCCCTGCAATGGACACACAAACAAACATGCA
TTAGAAATGCAGAAGTAGTGTGAAGTCGGTTGTAAAGATAATGCCAAACTCACTTATTAGCACT
GTTGAGAAAAGTCAAGCACTCTTGAGCTAGAGATTTCTGTGGGGCAGAAAAAACAAGAGAGAAT
TCATCAGGCAAGATGATTATAAGAAGGTACAAACACATTAAGCGAATAAAATGAGTCAGTGAAT
TAAAAAAAAAACAGGTTAACCTTAATCCCAGTGCTGCGGGCCGTAAGTTTATCCTTGGGATCTT
CTGCTTGCTCAAATTTCAAATGCACTTCAGGAGTTTTTGGCTCTGGTGCAATCGTGTTGATTCT
CCGGGCACATTCTATGTCCCACTTTTCTGCCCTCACGCTCACTGGCCGAGTGCTAAGAAGCTTC
AATGAGTTTGAAATCTCTCTCAGTCGGTCACTCAACTTTGGGGAGGATAGGGTACTGCTGGCAG
GAGTCTTCTCAACAAGGTTATCTGGGAGTGCCAGTCAGGTGATTATGTGATCATACTTTCCATT
CTCGTAATGAACTTGGCAACCAAATAATAAAAGTGATGCTATACCAGTGATAGAAGAGCAGGTC
AATCCCATGTCAGTACATGAATTCTCCGGTTCCATATTTGACAAGGCATAGTCCTGAACAAAGT
GACAGGGGCACTACGTATTTAATACAGAACTCCAAACAGATAATGAGGTATTCCTTGAAAAGAG
ATACCTCTTCTTGTATAGTACTTGCTAGCAGTTCTTGTGTGCTGCAATGTACCACTTCTTGCAT
TTCAGATGATTTAACATCTCCGGTGTTTCCTATTTCAGAACATCCCTGCATTTTGCTCCAAAAT
TATATCAATAGGCATTCACTTTGGAACACAGCTGAAAGGAAACCATAATAGTGTACCTCATTTA
GTAATGCAGCTCGAATTTCCATGCCTACTAATGGTTGTACTTCCTGTACAATAATGTAAGGAGG
TCCAAGATAAAATAACTCAACTGATAATCACCAAAAATGCATAGTAGGGTGCTTATTATACTAA
CATCAGCTTGTATTCTCACTGTTGCTGACTTAGTTTCTGTTACCACTGTAGAAGCAACATCCGT
AGCATTCTCCTCCTAAATAGTTCAAAAGTTGAAATTGATTAGTCAATTAGACGATAAAAGCAAT
TTCATGCCCATGTGTTACTTGTCTGATAAACCGCAACAGAGTATAACAATTAAGATAGTCAGTT
TTGTACCTTCAATGAATTGTTGCTTGGACAAAATAATTTCCTGACAACAAAAAAAAACAATTTA
AGCTGGTTTAGAAAAAAAAGAATGATAGATCTATTTTCACAAGAGTACCTTCCACTTATTTTAG
GTTTAGCATAATTTTCCTTCATCTTAATTGAAGTACAGATTGAGCTTCCAGATTTTTTCGTTGA
ACTAATGATTGGCTGAGTCCTGCGTGAAATAAAACCTCAATTAGCTACACTTTGTAATGAAATA
CCAAGCTCAAAATCTTTTACTTCACATATTAAATTCCTAAGACCTTCTATTAGCAGTAGGAGTT
TGTCCGCCTTTTACACCACTATTATTGAATCCAGGTCGGGCATTCTTCTCTTGCATCGACATTG
TTTTGTGAATAAACGTCCTTGACAAGGTTTTGGCATCGGTAGGTAAGTTCATATTTGACTTTGA
TGATTTTTTAGCACTCAAGGATAAGCTGTAGTATTGTTCATTGACCACTTGGCTCGAGCGAGAA
GCCAAGGCAAGAGTAGAAACTGAATCTTGGCAGCAATCTTCAGCCTACAACAAGCAAGAACAAG
GAAACATATATTTAGATTGGGAGAGTAACACCTATTGTGTATCAGTTCAAACAGGAAAGCTATG
GTACATATGCAAATATGTAACAACCAGTCAAAGCTAACTGTAGATGGAGCGATGCTTTAGTACA
TATTCTGTATAACAATTTGTAGCATATGGCAAATGAGGACTGGATCGAATTATCACACCGACAT
ATCCTTGGACTAAAAGGTAGTACTAGTTTGGTGACTTAGTGAAGAACAATACTATCAGGCATGA
AGGTTCTGTTTTATGCTAAACTACTTTATCAGCAACATGTACATATAGCACGCACATATATTGA
TCGAATCCTAATCACCGACAGGTACCGTGACCAAATGCTAAAACTTGCATTTCACAGGTAAATA
TACTTGTAGAACTTACATGGGTAAGAGTCAAACTAGTTTGATAACTATTTTCTTTGGTGCAGCC
CTATACAAAAGGAAAGTGTTAGCTGTTAGTAGCTTACCAAACAGGCTATCAGGACGCTACCGCT
CGTCTTGCTCTTGCATAAAGAATCTTGCAGAATACGAGTTACTTTGCTTTGTCTATATGGTACA
AATCTCTGGTTGCTGTTCAGTGCTTGGACAACATTCATCAAGGCATGCATAGACTTGTTACCGG
TTAGTAGAGCAAGACCTTCATTCTTCTTCTGCTTGGGATCCACATAGCCTGATGATCGAAATAT
GCAGTACAATATTTATGCAACACACTATACCAATGAGGAGCTAGAAGGTTGGGTGCAGAAAAGA
GAAGAGCAGACCTGCCAGGTTGAGGAAGTTTATCTTAGCTAGAGCACATTCTTTGCCTTGCTGA
TCAAAGCTAGAGACGTAGATAATCAGCCCTTGGTGTCCCCAATCCTGTAACTGGGTGGAATCTT
TAGCGGGATGGTGCCTCTGCTGGTTGGTAGCGCAACAACAAAGCTGCGAAAACTCCTCGATTGA
GTTGACACCAACCTGTAAAATATGACGGATCCAGTTAATACTAAATGAATTTTGCTATGATTTA
ATAGGCATACAAACAATTCAGGAAAGATGAGTAGTGCTGTACCCTGGAGAGGCCCTTGAGGTGA
GTCTGTCCGTCGGCATCCTCTAGTATGAGAACCTCATGGTTCTTGGGCTCCAAGAGGTCGAGGA
TGTGAGTATCTTGGAGCACCTGATAGGATGAGACAGTGACAGCGGCACCAATGGCTTTGGAGGA
GTCGAGGAGTTGCGCCATTGCCATGGTGAACAAGCCAGGTTGATCAGGAGACC
Conservation Information
Conserved circRNAs NA
PMCS 0.092720566
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017