Detail information of Os04g0375900_circ_g.4


General Information
CircRNA Name Os04g0375900_circ_g.4
ID in PlantcircBase osa_circ_023538
Alias Os_ciR4403
Organism Oryza sativa
Position chr4: 18362988-18363355  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os04g0375900
Parent gene annotation Kinesin, motor region domain containing protein. (Os04t0375900-0
1)
Parent gene strand -
Alternative splicing Os04g0375900_circ_g.1 Os04g0375900_circ_g.2 Os04g0375900_circ_g.3
Support reads 5
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0375900-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCCATGTGTTACTTGTCTGATAAACCGCAACAGAGTATAACAATTAAGATAGTCAGTTTTGT
ACCTTCAATGAATTGTTGCTTGGACAAAATAATTTCctcatttagtaatgcagctcgaatttcc
atgcctactaatggttgtacttcctgtacaataatgtaaggaggtccaagataaaataactcaa
ctgataat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATTTAGTAATGCAGCTCGAATTTCCATGCCTACTAATGGTTGTACTTCCTGTACAATAATG
TAAGGAGGTCCAAGATAAAATAACTCAACTGATAATCACCAAAAATGCATAGTAGGGTGCTTAT
TATACTAACATCAGCTTGTATTCTCACTGTTGCTGACTTAGTTTCTGTTACCACTGTAGAAGCA
ACATCCGTAGCATTCTCCTCCTAAATAGTTCAAAAGTTGAAATTGATTAGTCAATTAGACGATA
AAAGCAATTTCATGCCCATGTGTTACTTGTCTGATAAACCGCAACAGAGTATAACAATTAAGAT
AGTCAGTTTTGTACCTTCAATGAATTGTTGCTTGGACAAAATAATTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.107110507
Functional Information
Coding potential Y
Potential coding position 18363017-18362993(+)
18363328-18362993(+)
18363019-18363155(-)
18362994-18363155(-)
Potential amino acid sequence MPTNGCTSSACILTVADLVSVTTVEATSVAFSSFNELLLGQNNFLI*(+)
MNCCLDKIISSFSNAARISMPTNGCTSSACILTVADLVSVTTVEATSVAFSSFNELLLGQNNFL
I*(+)
MEIRAALLNEEIILSKQQFIEGGECYGCCFYSGNRN*(-)
MRKLFCPSNNSLKEENATDVASTVVTETKSATVRIQADEVQPLVGMEIRAALLNEEIILSKQQF
IEGGECYGCCFYSGNRN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015