Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0375900_circ_g.4 |
ID in PlantcircBase | osa_circ_023538 |
Alias | Os_ciR4403 |
Organism | Oryza sativa |
Position | chr4: 18362988-18363355 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Os04g0375900 |
Parent gene annotation |
Kinesin, motor region domain containing protein. (Os04t0375900-0 1) |
Parent gene strand | - |
Alternative splicing | Os04g0375900_circ_g.1 Os04g0375900_circ_g.2 Os04g0375900_circ_g.3 |
Support reads | 5 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0375900-01:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.107110507 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18363017-18362993(+) 18363328-18362993(+) 18363019-18363155(-) 18362994-18363155(-) |
Potential amino acid sequence |
MPTNGCTSSACILTVADLVSVTTVEATSVAFSSFNELLLGQNNFLI*(+) MNCCLDKIISSFSNAARISMPTNGCTSSACILTVADLVSVTTVEATSVAFSSFNELLLGQNNFL I*(+) MEIRAALLNEEIILSKQQFIEGGECYGCCFYSGNRN*(-) MRKLFCPSNNSLKEENATDVASTVVTETKSATVRIQADEVQPLVGMEIRAALLNEEIILSKQQF IEGGECYGCCFYSGNRN*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |