Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA009415_circ_g.2 |
ID in PlantcircBase | osi_circ_005274 |
Alias | 3:40400549|40401613 |
Organism | Oryza sativa ssp. indica |
Position | chr3: 40400549-40401613 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA009415 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA009415_circ_g.1 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA009415-TA:3 |
Conservation Information | |
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Conserved circRNAs | osa_circ_022763* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
40401558-40400551(-) 40401519-40400554(+) |
Potential amino acid sequence |
MTTSTTKSGPSLHSRFEYVENEPAVDSRNGGTQMTGHVAPPKSSNFFQEYGMDNGFQKKTSTAA TKTQIQETDEARKKFSNAKAISSSQFFGNQSREEKEAQMSLQKFAGSSSISSADLFGRRDMDDS NLDLSAADLINRISFQPSESLYDQKPEEPKPAAPVMTTSTTKSGPSLHSRFEYVENEPAVDSRN GGTQMTGHVAPPKSSNFFQEYGMDNGFQKKTSTAATKTQIQETDEARKKFSNAKAISSSQFFGN QSREEKEAQMSLQKFAGSSSISSADLFGRRDMDDSNLDLSAADLINRISFQPSESLYDQKPEEP KPAAPVMTTSTTKSGPSLHSRFEYVENEPAVDSRNGGTQMTGHVAPPKSSNFFQEYGMDNGFQK KTSTAATKTQIQETDEARKKFSNAKAISSSQFFGNQSREEKEAQMSLQKFAGSSSISSADLFGR RDMDDSNLDLSAADLINRISFQPSESLYDQKPEEPKPAAPVMTTSTTKSGPSLHSRFEYVENEP AVDSRNGGTQMTGHVAPPKSSNFFQEYGMDNGFQKKTSTAATKTQIQETDEARKKFSNAKAISS SQFFGNQSREEKEAQMSLQKFAGSSSISSADLFGRRDMDDSNLDLSAADLINRISFQ(-) MQGRATFCGGSSHYWGSRFWLFRFLIIQAFTWLE*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |