Detail information of BGIOSGA009415_circ_g.2


General Information
CircRNA Name BGIOSGA009415_circ_g.2
ID in PlantcircBase osi_circ_005274
Alias 3:40400549|40401613
Organism Oryza sativa ssp. indica
Position chr3: 40400549-40401613  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA009415
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA009415_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA009415-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGAATGCAAGGACGGGCCACTTTTTGTGGTGGAAGTAGTCATTACTGGGGCAGCAGGTTTTGG
CTCTTCAGGTTTCTGATCATACAGGCTTTCACTTGGctggaatgatattctgttgatgagatcc
gcagcacttaaatccagattcgagtcatccatgtcacggcggccaaaaagatcagcacttgaaa
tggacgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGAATGATATTCTGTTGATGAGATCCGCAGCACTTAAATCCAGATTCGAGTCATCCATGTCA
CGGCGGCCAAAAAGATCAGCACTTGAAATGGACGAAGAACCCTGAATTAAAGGGGGAAAAAAAC
AGGAGAACCGTAAGGATAAAAAAAGATGCAAACTTCTACAGAATATTCAAATGAAGTACTAGCA
CAAACATAAACAATAGACAAGAAATTTCAAGTCTGGAATGAAGTTAAGAATGCTTCGACAAGTT
CGAAGGAGATGCAATGTAATGGTCCTCTGACAAAGAGATGCTAAACTAATACGCACCGCAAACT
TTTGAAGGGACATTTGAGCCTCTTTCTCTTCTCTGCTTTGATTGCCAAAAAACTGAGATGATGA
AATTGCCTTTGCATTAGAGAATTTTTTCCTTGCTTCGTCAGTCTCCTGAATCTGAAAGGTATTC
ACGTCCAGTGTCGGTACTTATTAACATAACAAAAATCTACAAGCGGAAAACTATTTGATATAAT
AAGAACATGCTAGCAATAACTGACTTTTCCAAAGTTCAAAAGGTAATTATTCTGTGAATTTTGT
AGATGTTCACTGATTATTAAACAGCAGAATGCAAGCATGCAGCAAATAAAGGAAGGGGAAATGA
CATCATGAAATCAAAACAAGTCAAGCTAGTGGATGCAGCAAAATCTAGTGCAGTGTTTACATTA
TCATAGAAAGTAAACTTTGCAAACTTATGTATTGATCAGAAAAGTCAATCTATTTATTATTTAC
TTATTGACATAGCACAAACATTGGTTCAATATTTACCTGGGTCTTTGTGGCAGCTGTGCTTGTT
TTCTTTTGGAACCCATTATCCATTCCGTACTCTTGAAAGAAGTTTGATGATTTTGGTGGTGCTA
CGTGGCCAGTCATTTGAGTTCCTCCATTTCTTGAATCAACTGCTGGCTCATTCTCCACATATTC
AAAACGTGAATGCAAGGACGGGCCACTTTTTGTGGTGGAAGTAGTCATTACTGGGGCAGCAGGT
TTTGGCTCTTCAGGTTTCTGATCATACAGGCTTTCACTTGG
Conservation Information
Conserved circRNAs osa_circ_022763*
PMCS
Functional Information
Coding potential Y
Potential coding position 40401558-40400551(-)
40401519-40400554(+)
Potential amino acid sequence MTTSTTKSGPSLHSRFEYVENEPAVDSRNGGTQMTGHVAPPKSSNFFQEYGMDNGFQKKTSTAA
TKTQIQETDEARKKFSNAKAISSSQFFGNQSREEKEAQMSLQKFAGSSSISSADLFGRRDMDDS
NLDLSAADLINRISFQPSESLYDQKPEEPKPAAPVMTTSTTKSGPSLHSRFEYVENEPAVDSRN
GGTQMTGHVAPPKSSNFFQEYGMDNGFQKKTSTAATKTQIQETDEARKKFSNAKAISSSQFFGN
QSREEKEAQMSLQKFAGSSSISSADLFGRRDMDDSNLDLSAADLINRISFQPSESLYDQKPEEP
KPAAPVMTTSTTKSGPSLHSRFEYVENEPAVDSRNGGTQMTGHVAPPKSSNFFQEYGMDNGFQK
KTSTAATKTQIQETDEARKKFSNAKAISSSQFFGNQSREEKEAQMSLQKFAGSSSISSADLFGR
RDMDDSNLDLSAADLINRISFQPSESLYDQKPEEPKPAAPVMTTSTTKSGPSLHSRFEYVENEP
AVDSRNGGTQMTGHVAPPKSSNFFQEYGMDNGFQKKTSTAATKTQIQETDEARKKFSNAKAISS
SQFFGNQSREEKEAQMSLQKFAGSSSISSADLFGRRDMDDSNLDLSAADLINRISFQ(-)
MQGRATFCGGSSHYWGSRFWLFRFLIIQAFTWLE*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021