Detail information of Os03g0854100_circ_g.2


General Information
CircRNA Name Os03g0854100_circ_g.2
ID in PlantcircBase osa_circ_022763
Alias NA
Organism Oryza sativa
Position chr3: 35976047-35977131  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene Os03g0854100
Parent gene annotation Similar to ARF GAP-like zinc finger-containing protein ZIGA2 (Fr
agment). (Os03t0854100-01);Similar to predicted protein. (Os03t0
854100-02)
Parent gene strand -
Alternative splicing Os03g0854100_circ_g.3 Os03g0854100_circ_g.4 Os03g0854100_circ_g.5 Os03g0854100_circ_g.6 Os03g0854100_circ_g.7 Os03g0854100_circ_g.8 Os03g0854100_circ_g.9 Os03g0854100_circ_g.10 Os03g0854100_circ_g.11 Os03g0854100_circ_g.12 Os03g0854100_circ_g.13 Os03g0854100_circ_g.14 Os03g0854100_circ_g.15
Support reads 52
Tissues root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0854100-02:3
Os03t0854100-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGAATGCAAGGACGGGCCACTTTTTGTGGTGGAAGTAGTCATTACTGGGGCAGCAGGTTTTGG
CTCTTCAGGTTTCTGATCATACAGGCTTTCACTTGGctggaatgatattctgttgatgagatcc
gcagcacttaaatccagattcgagtcatccatgtcgcggcggccaaaaagatcagcacttgaaa
tggacgaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 489
Transcript exons: 35976047-35976151,35976358-35976480,35976871-35977131
CTGGAATGATATTCTGTTGATGAGATCCGCAGCACTTAAATCCAGATTCGAGTCATCCATGTCG
CGGCGGCCAAAAAGATCAGCACTTGAAATGGACGAAGAACCCGCAAACTTTTGAAGGGACATTT
GAGCGTCTTTCTCTTCTCTGCTTTGATTGCCAAAAAACTGAGATGATGAAATTGCCTTTGCATT
AGAGAATTTTTTCCTTGCTTCGTCAGTCTCCTGAATCTGGGTCTTTGTGGCAGCTGTGCTTGTT
TTCTTTTGGAACCCATTATCCATTCCGTACTCTTGAAAGAAGTTTGATGATTTTGGTGGTGCTA
CGTGGCCAGTCATTTGAGTTCCTCCATTTCTTGAATCAACTGCTGGCTCATTCTCCACATATTC
AAAACGTGAATGCAAGGACGGGCCACTTTTTGTGGTGGAAGTAGTCATTACTGGGGCAGCAGGT
TTTGGCTCTTCAGGTTTCTGATCATACAGGCTTTCACTTGG

Genomic sequence CTGGAATGATATTCTGTTGATGAGATCCGCAGCACTTAAATCCAGATTCGAGTCATCCATGTCG
CGGCGGCCAAAAAGATCAGCACTTGAAATGGACGAAGAACCCTGAATTAAAGGGGGAAAAAAAA
GGAGAACCGTAAGGGAAAAAAAAGATGCAAACTTCTACAGAATATTCAAATGAAGTACTAGCAC
AAACATAAACAATAGACAAGAAATTTCAAGTCTGGAATGAAGTTAAGAATGCTTCGACAAGTTC
GAAGGAGATGCAATGTAATGGTCCTCGGACAAAGAGATGCTAAACTAATACGCACCGCAAACTT
TTGAAGGGACATTTGAGCGTCTTTCTCTTCTCTGCTTTGATTGCCAAAAAACTGAGATGATGAA
ATTGCCTTTGCATTAGAGAATTTTTTCCTTGCTTCGTCAGTCTCCTGAATCTGAAAGGTATTCA
CGTCCAGTGTCAGTACTTATTAACATAACAAAAATCTACAAGCGGAAAACTATTTGATATAATA
AGAACATGCTAGCAATAACAACAGCTTGCATAGAGAGAACTGACTTTTCCAAAGTTCAAAAGGT
AATTATTCTGTGAAATTTGTAGATGTTCACTGATGATTAAACAGCAGAATGCAAGCATGCAGCA
AATAAAGGAAGGGGAAATGACATCATGAAATCAAAACAAGTCAAGCTAGTGGATGCAGCAAAAT
CTAGTGCAGTGTTTACATTATCATAGAAAGTAAACTTTGCAAACTTATGTATTGATCAGAAAAG
TCAATCTATTTATTATTTACTTATTGACATAGCACAAACATTGGTTCAATATTTACCTGGGTCT
TTGTGGCAGCTGTGCTTGTTTTCTTTTGGAACCCATTATCCATTCCGTACTCTTGAAAGAAGTT
TGATGATTTTGGTGGTGCTACGTGGCCAGTCATTTGAGTTCCTCCATTTCTTGAATCAACTGCT
GGCTCATTCTCCACATATTCAAAACGTGAATGCAAGGACGGGCCACTTTTTGTGGTGGAAGTAG
TCATTACTGGGGCAGCAGGTTTTGGCTCTTCAGGTTTCTGATCATACAGGCTTTCACTTGG
Conservation Information
Conserved circRNAs osi_circ_005274* osi_circ_013911
PMCS 0.361712197
Functional Information
Coding potential Y
Potential coding position 35977037-35976052(+)
35977076-35976049(-)
Potential amino acid sequence MQGRATFCGGSSHYWGSRFWLFRFLIIQAFTWLE*(+)
MTTSTTKSGPSLHSRFEYVENEPAVDSRNGGTQMTGHVAPPKSSNFFQEYGMDNGFQKKTSTAA
TKTQIQETDEARKKFSNAKAISSSQFFGNQSREEKDAQMSLQKFAGSSSISSADLFGRRDMDDS
NLDLSAADLINRISFQPSESLYDQKPEEPKPAAPVMTTSTTKSGPSLHSRFEYVENEPAVDSRN
GGTQMTGHVAPPKSSNFFQEYGMDNGFQKKTSTAATKTQIQETDEARKKFSNAKAISSSQFFGN
QSREEKDAQMSLQKFAGSSSISSADLFGRRDMDDSNLDLSAADLINRISFQPSESLYDQKPEEP
KPAAPVMTTSTTKSGPSLHSRFEYVENEPAVDSRNGGTQMTGHVAPPKSSNFFQEYGMDNGFQK
KTSTAATKTQIQETDEARKKFSNAKAISSSQFFGNQSREEKDAQMSLQKFAGSSSISSADLFGR
RDMDDSNLDLSAADLINRISFQPSESLYDQKPEEPKPAAPVMTTSTTKSGPSLHSRFEYVENEP
AVDSRNGGTQMTGHVAPPKSSNFFQEYGMDNGFQKKTSTAATKTQIQETDEARKKFSNAKAISS
SQFFGNQSREEKDAQMSLQKFAGSSSISSADLFGRRDMDDSNLDLSAADLINRISFQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017