Detail information of Solyc06g005080.2_circ_g.6


General Information
CircRNA Name Solyc06g005080.2_circ_g.6
ID in PlantcircBase sly_circ_001850
Alias NA
Organism Solanum lycopersicum
Position chr6: 76764-80638  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method Segemehl, CIRI
Parent gene Solyc06g005080.2
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc06g005080.2_circ_g.3 Solyc06g005080.2_circ_g.4 Solyc06g005080.2_circ_g.5 Solyc06g005080.2_circ_g.7 Solyc06g005080.2_circ_g.8
Support reads NA
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Solyc06g005080.2.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCAGTCACTAAGGAAAGCACGAAACTCTTTAATGAGTGATTGGTACTCGGTATTATTACTGTC
CAAAGCATCATCATCTTCTAGAAGCAGCCGATTGATtttgcatgtggttcacttgaataacgca
tcattgcaggaatgagctttctcgggttcaaactcttagtggtcatccatgactcaacagtttc
atatgcat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 416
Transcript exons: 76764-76894,77189-77251,80044-80122,80496-80638
TTTGCATGTGGTTCACTTGAATAACGCATCATTGCAGGAATGAGCTTTCTCGGGTTCAAACTCT
TAGTGGTCATCCATGACTCAACAGTTTCATATGCATCAAGCATGATGAGATCTGGTGCAAACTT
GTACTGAAGTTCTGTTGCAACATTAGGCTTCTGAAGAACTTGTAACGCCTTCTTTGCTTCTCCT
TGCTGAATGTAGTGGTGAAGCACAATTTCGTATTGCTCCTTTAGACTAGCAAAGAACACTAGCT
CATCAACTCTACCGTAGCTTTCTAGTAGTTTCATGGTGGTTGCCTCATCCAATACATCCTTGCA
GTCACTAAGGAAAGCACGAAACTCTTTAATGAGTGATTGGTACTCGGTATTATTACTGTCCAAA
GCATCATCATCTTCTAGAAGCAGCCGATTGAT

Genomic sequence TTTGCATGTGGTTCACTTGAATAACGCATCATTGCAGGAATGAGCTTTCTCGGGTTCAAACTCT
TAGTGGTCATCCATGACTCAACAGTTTCATATGCATCAAGCATGATGAGATCTGGTGCAAACTT
GTACTGCAATAGAACAAAAGAATCCAAGTAAGGCATGGTGCGATTACAGTAGATTCAAAACACA
ATCCCTACTTAGGGGTTGTTTGGATTGGCTTTCTATAAGTGCTTATAAGCTAAAACTCATAAGT
TAGGAACACCCGACTTTTGGCTTTTTTTGCACTTTTTAAGCCTAAGATATAGTGCTTAAAGCAC
ATTTTCTGTTTGCCAAACGTTTCAAATATTCAAAAAAAGCTTAAAAGTCAAAAGCTACTTAAAA
TAAGCCAATCCAAACACCCACTTAATAGTTTTTACCCATACCTGAAGTTCTGTTGCAACATTAG
GCTTCTGAAGAACTTGTAACGCCTTCTTTGCTTCTCCTTGCTGTGATTGCATAGAAAAAGAAAG
ACAAATCACTGTTCATACCAACAATCAATTAGTGCACTGCAGTTACTATGAGCACAAAATGCAG
AACATCTGCAAATAGATCTACAAATAATATTTCTTCCCTTGGTCATATTCACAAGTATCCAAAA
ACAGAAGCATGCAAGTTAACAGAAGTTCATGCTATATGCCAAGTGCAATCTCAAAGATAGAAAT
GCAAGAGTCTATATGGGGATGCAATGGGGTTTGACAGAGATCTTTGAAGATAGGAATGGACAGT
GGAATCAGTAAAGAAAATATGTGTTATATACATCAAATGGTAGAACCAATCATAGAATCAGGAA
GTGCAGCTAGAATGGACACTAAAATTAAGCACAATGCTCCAAAATAGCATCGGTAGAAGCATTA
CAGTCGGAATAATCACCAGGTATAACAGTGGTGTCATTGGAAAAGATGCTAAAAGACATCATAC
GCTAGAGTGCACAAATCAACCTTTACGGAAGGGAACATAATCAAGAGAGAAATCTTGTAAGGTT
AGTAAAACATATTTTATTATAAAAATAAACACGATGTTTTACGAGAAATAACGACCTAAATGAA
GGATGCCTCATTGATCTAGAGGTAGGCCTAAGACGATAAATAAGAGATTTACGAGGGTTAATCC
AAGCCTTATTTTGATATTAATTGGAGTTTTAAGACGGAACTAAAAGAGAAACAAACCATTTGAT
TCACTAAATACTTGAAACAGTACATATCTTCAAACGAAGAAGTAGGAAAGATAGAATAATTAAA
CTAAGGGAAATAGGATAACAAAAGGGGAAAATCCAAAACTTCAAGATATCCTACGACGTTGATT
CCAAAGCTTTAGGCAATTGTTCTTTCATCTCTGGAGTGATGTAATATGGACATCCTCACAACCA
TGATGCCTTTCCCTGCTAAGATAGTCCACGCTCTTAATATTCTTTAGGAGCCACACATAATATT
CTGATGCTCAAAAGGCTTGATCCTCATAGACACTCATAGTCACCAACTCTTACAACCTTTGAAG
TGTATTGTGGACTTTTAGAATCTCTAGCCCAAATTTGTACTCGAAATTGCCCATATTCTACCGC
AATGGTATGACTTGAGTTTGCACAAACTGACGAAGCACTCATAAAGGAGAATATGATAGGACAC
CCCCTTATAGACCAAGGAGCTCGATGTAGTAAAGCTCATCACCTCTTATAATAACACTAGGGGC
AGACTGCTAAGAGTATTTCCATTAAACTTGATAATGCCAAAGCTCTTTATGAATGCAACCCAAT
CTTCAGGTCCTACTAGGGCAATAAACTTGGCCATGCTCTGCGAATGAGTGTCAATTTTGTTGCC
AACCCCAGTAAGAATGTCTATCATGTTAGACCGCTTGTAGAAGTGTTCTATGGCCCACAATTGA
AGCAAAAAGTTGCATCCCTCGAAAGATCTCCTACCTTTAGTACATTTGGTTGGAACCCTCAACA
TTTCTGCTACTATCTGGCACCACATTACATCAATGCTACCCACCTCTTGGGCCACCGCTTAAAC
CATGGAACTAAGGAATGTATCTATTTTCCATTTTCTTCCAGATATACCAAAGTACCCAACAATG
CAATCGCAAAAGCGCCCAAATGGTTCTTCTCTCACTTTTCGTTCGAGCAAGAAACCTCTCCTTT
CAAATATCTTTGAACCATCCTAACGACCAAAGCATTCATACAGAAAGTCCAAAGAGATCCATTC
ATAGTCCAAGCATGCCAATGCAAGAACTTCCCGGATTACATGTGAGGTGCGATCATGATCCTCC
GATGATAATGCAAATTAGTAAACCCACCAATTTCCTATGGTGGGTGCTAACTCAATCTTCAAAT
TTGAAGACCACTCTTTCTGGATCCCAAAATTTTAGCAATGCTTTCACCAAATATCAATCAGAAG
TGACATAAATAAGGAACGTTGGAAAATCAGCAATTTAAAAATCTCCCTACCATGGTCTCGTTTA
ATGTCTTCCCACCATCTCCTAAGCTTAAGGGTGAACCCCCACCACCATTTGAGGTTGGAGATTG
GTAACGAAGTTGAAGGTATCAAAGCTTTGAAACTTTATTTTCCTTTTTAGATTTGTGGTATAAA
GGGAAGCCAACAAAGATATTTCCTGTGAATATTTCCAACATACAGTGCACTTTGGTATGTGGAC
TTGTTCAGAAGGGTGGGGGTTATACGTGAAAGGTTTGTGTATATCCAGTGAAGTATGAAAGATA
TGTCATGAGTAAGCTTTTGCGAGGAAAGGGAGACTATCCACGCTGGTGGAGACTAGGGAACGTT
GTTACAGGTTATGACTCACTCAACAGTATGAGTCAAAAGTGTTTAATGCTAATGGGGAGGTGTA
GGGAAAGAAGGAACGGAGGAGGAGAACGGAAGGAATGAGATAGGGTGAGAAAAGTTCAAGCAGA
AAATTTGAAGGACTACCTGGCTGGAAAGCCCCATTAATAAGATTGTTGATTTTGTAATCTAATG
ACATTCAAAAGGAATACATGAGAGAATTGTATTATACACCAGATCTGAGAAGAACTAGCATGAA
AGACAACAATCAACCTCTAAATGTGGAGGGGAACAGTTTTCTCCAAACAAAAGTTAAAACAAGA
CAAGTATCCAAAATCATAAAGATGCCTCTGGTAACCCCTAACAAAAATAAAGAACAGCATGAAA
GTGGAACTAAGACATTGACAAAGAAAAAAGACAAGCCAATGAAATACCAGCATGTCAAAAGATA
CATAAAAAGAACAAACCTGAATGTAGTGGTGAAGCACAATTTCGTATTGCTCCTTTAGACTAGC
AAAGAACACTAGCTCATCAACTCTACCGTAGCTACAACAAAAAAAATAACAACATAAAGGACAA
TAAAGCCAGAAATAAACTATTAGAACATATTAGGGAAGGAATATATAATAAATATATGAAGCGA
AGATAACTGAACTTTTACAAAGGAAGAGTTCATTTTTTCCCTAGATAACCATAGATTTATTTTT
TTTTATGAAATTTCAGCTTGAAAAACATTGCAGGTAACAGCACCTAAAATGTCAAATATGTTCT
ACCAGGTGAATCTCTGACATGTACATGAAAAACCTGTATCATGTTTCTAGGGGAAAGCAGAGAT
AGAAAAATAAGTAGTTGGACTAACAAAAAAAATTTACAAGAATTGGATTTAAAACCAAGCGAGA
TCAGTTGCCAGATAAGCTACCTTTCTAGTAGTTTCATGGTGGTTGCCTCATCCAATACATCCTT
GCAGTCACTAAGGAAAGCACGAAACTCTTTAATGAGTGATTGGTACTCGGTATTATTACTGTCC
AAAGCATCATCATCTTCTAGAAGCAGCCGATTGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.486237568
Functional Information
Coding potential Y
Potential coding position 80512-76803(+)
80514-80622(-)
Potential amino acid sequence MVVASSNTSLQSLRKARNSLMSDWYSVLLLSKASSSSRSSRLILHVVHLNNASLQE*(+)
MKLLESYGRVDELVFFASLKEQYEIVLHHYIQQGEAKKALQVLQKPNVATELQYKFAPDLIMLD
AYETVESWMTTKSLNPRKLIPAMMRYSSEPHAKSIGCF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tan et al., 2017