Detail information of Os02g0817300_circ_g.5


General Information
CircRNA Name Os02g0817300_circ_g.5
ID in PlantcircBase osa_circ_041154
Alias NA
Organism Oryza sativa
Position chr2: 35058832-35059191  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRI-long
Parent gene Os02g0817300
Parent gene annotation Hypothetical protein. (Os02t0817300-00)
Parent gene strand +
Alternative splicing Os02g0817300_circ_g.3 Os02g0817300_circ_g.4 Os02g0817300_circ_g.6 Os02g0817300_circ_g.7 Os02g0817300_circ_g.8
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA:0
Os02t0817300-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGTAGGAGGCTATGATGCATGCGAGATGATGTGGTAAACAAAAGCAAAATAGAGAGTTAAACA
CACACTTAGGATGAAGAAACAAGTAGGAGGGAGAACaagtcaatatatgtaaataattgaaaat
tatcttatctgtggatatatcagagggtatagtgtcccatctgtgggaaataaaaattgaagaa
acaagtca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 360
Transcript exons: 35058832-35059191
AAGTCAATATATGTAAATAATTGAAAATTATCTTATCTGTGGATATATCAGAGGGTATAGTGTC
CCATCTGTGGGAAATAAAAATTGAAGAAACAAGTCATAATCTCAACGGAGCTCAAAATACTGGA
GATGACAAAAGATGAACTACGCAGAGGCCTTGGCTAGTGTTTTTATTAATTGAAGTTCAACTAG
ATTATGTCAGTCAAGGTGCCACAGTATATCGACAATGAAGAGAACCTTTCACATGTAAAAGTAT
AAGTTGGTAGGAGGCTATGATGCATGCGAGATGATGTGGTAAACAAAAGCAAAATAGAGAGTTA
AACACACACTTAGGATGAAGAAACAAGTAGGAGGGAGAAC

Genomic sequence AAGTCAATATATGTAAATAATTGAAAATTATCTTATCTGTGGATATATCAGAGGGTATAGTGTC
CCATCTGTGGGAAATAAAAATTGAAGAAACAAGTCATAATCTCAACGGAGCTCAAAATACTGGA
GATGACAAAAGATGAACTACGCAGAGGCCTTGGCTAGTGTTTTTATTAATTGAAGTTCAACTAG
ATTATGTCAGTCAAGGTGCCACAGTATATCGACAATGAAGAGAACCTTTCACATGTAAAAGTAT
AAGTTGGTAGGAGGCTATGATGCATGCGAGATGATGTGGTAAACAAAAGCAAAATAGAGAGTTA
AACACACACTTAGGATGAAGAAACAAGTAGGAGGGAGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.129860532
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study