Detail information of Os02g0817300_circ_g.6


General Information
CircRNA Name Os02g0817300_circ_g.6
ID in PlantcircBase osa_circ_017189
Alias NA
Organism Oryza sativa
Position chr2: 35059192-35060323  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0817200
Parent gene annotation WD-40 repeat containing protein. (Os02t0817200-01);Similar to ac
tin-related protein 2/3 complex subunit 1B. (Os02t0817200-02)
Parent gene strand -
Alternative splicing Os02g0817300_circ_g.3 Os02g0817300_circ_g.4 Os02g0817300_circ_g.5 Os02g0817300_circ_g.7 Os02g0817300_circ_g.8
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0817300-00:4
Os02t0817300-00:4
Os02t0817200-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAACTAATACAGGTAGCAGACACAATTACCAGTTGTTGTCTTGTTCATAGTAGCAAATGCACA
CAGACTTAGCACCACTTCCTACGGCAAACTTGTTTTctgcataggctagtgtctttccacttgg
cgaccaccttacaccaaatgcccacatagatgataggtcaagctgagcaatttgctgcaaccac
atagcaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCATAGGCTAGTGTCTTTCCACTTGGCGACCACCTTACACCAAATGCCCACATAGATGATAG
GTCAAGCTGAGCAATTTGCTGCAACCACATAGCAGAAAAAATGTTACAAGGATGATCAGCACTT
TGACAGGAAACAAAAAATGCTATAGCAGCTAATATAAGGATAGTATGCCTTGCCAAGGGTTGTG
AATCATAATGAGTTCTCAAGTTCTTAGTTAATGGAGTATTTAATAAAAAAAACACTGATGCTGA
TGCTAAAATGTATAATTAGCCTAAGAAGTTGTGTGGTGACAAAATGGAGAGGCATATTTGAAAA
TCGCAAAGGGATATATCGTAAGACATTTTCATTCCAACAGAAGGAACAGTGGAACACTATGCAT
TAATGGTCTAAGAAATGGCAAATACCTCTCCAAATTTCCAATCAGTAGAAGTGCTCGCATGTGA
TCCCCTGGTCAAGAAAAAGCTATGAGATAAACAAAATATTTAGAAGATCCTGATAGGCATAAGA
ACAGCAAGGTCCACCTTGTATCGACACCCTTGATGAAAGTGGATAACACTCTGCATTTACCATC
AGTTGATGTTGTTGCAAGAAGTATCTGAAGAAACGCGAAAGCAAGCAAAATAAAATATTGCCTC
CAAAGAAAAACAGGTCCCGCATATACATAGATGTTGCGTGTATAAACCAAGCAGAATTGCATAG
TGGTGGGATTGGGAGATATGCATCTCACAAGTACAAGAAAAAAAAGCAAAACGAAAGAAAAACA
CAGCTGTAATGAAAGCACAATATAAAGAGAGACGCTTACATTGTTTGGATGCCATGCAACACTA
GTGACAGAAGATTCATGCTTCTTCCTAACAACCTTGCTAATCCACCTATAGGTGAAGGATCCAG
GCAGTTAAGAAAAATACATATCAAGAGTGGCACATCAACCTACCTACTTGCATGAACTATATCA
GTAGAAAACATACAACCCAGTTGTAATGTTTGACGTAGCTAATGTAAAACTAAGGAAATCCAAA
AGTAGCAGTCAACTAATACAGGTAGCAGACACAATTACCAGTTGTTGTCTTGTTCATAGTAGCA
AATGCACACAGACTTAGCACCACTTCCTACGGCAAACTTGTTTT
Conservation Information
Conserved circRNAs osi_circ_012484
PMCS 0.125037588
Functional Information
Coding potential Y
Potential coding position 35060009-35059201(+)
35059248-35059194(-)
Potential amino acid sequence MPCNTSDRRFMLLPNNLANPPVVVLFIVANAHRLSTTSYGKLVFCIG*(+)
MWAFGVRWSPSGKTLAYAENKFAVGSGAKSVCICYYEQDNNWWISKVVRKKHESSVTSVAWHPN
NILLATTSTDGKCRVLSTFIKGVDTRGSHASTSTDWKFGEQIAQLDLSSMWAFGVRWSPSGKTL
AYAENKFAVGSGAKSVCICYYEQDNNWWISKVVRKKHESSVTSVAWHPNNILLATTSTDGKCRV
LSTFIKGVDTRGSHASTSTDWKFGEQIAQLDLSSMWAFGVRWSPSGKTLAYAENKFAVGSGAKS
VCICYYEQDNNWWISKVVRKKHESSVTSVAWHPNNILLATTSTDGKCRVLSTFIKGVDTRGSHA
STSTDWKFGEQIAQLDLSSMWAFGVRWSPSGKTLAYA(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017