Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0817300_circ_g.6 |
ID in PlantcircBase | osa_circ_017189 |
Alias | NA |
Organism | Oryza sativa |
Position | chr2: 35059192-35060323 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os02g0817200 |
Parent gene annotation |
WD-40 repeat containing protein. (Os02t0817200-01);Similar to ac tin-related protein 2/3 complex subunit 1B. (Os02t0817200-02) |
Parent gene strand | - |
Alternative splicing | Os02g0817300_circ_g.3 Os02g0817300_circ_g.4 Os02g0817300_circ_g.5 Os02g0817300_circ_g.7 Os02g0817300_circ_g.8 |
Support reads | 1 |
Tissues | shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os02t0817300-00:4 Os02t0817300-00:4 Os02t0817200-01:5 |
Conservation Information | |
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Conserved circRNAs | osi_circ_012484 |
PMCS | 0.125037588 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
35060009-35059201(+) 35059248-35059194(-) |
Potential amino acid sequence |
MPCNTSDRRFMLLPNNLANPPVVVLFIVANAHRLSTTSYGKLVFCIG*(+) MWAFGVRWSPSGKTLAYAENKFAVGSGAKSVCICYYEQDNNWWISKVVRKKHESSVTSVAWHPN NILLATTSTDGKCRVLSTFIKGVDTRGSHASTSTDWKFGEQIAQLDLSSMWAFGVRWSPSGKTL AYAENKFAVGSGAKSVCICYYEQDNNWWISKVVRKKHESSVTSVAWHPNNILLATTSTDGKCRV LSTFIKGVDTRGSHASTSTDWKFGEQIAQLDLSSMWAFGVRWSPSGKTLAYAENKFAVGSGAKS VCICYYEQDNNWWISKVVRKKHESSVTSVAWHPNNILLATTSTDGKCRVLSTFIKGVDTRGSHA STSTDWKFGEQIAQLDLSSMWAFGVRWSPSGKTLAYA(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |