Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038805_circ_g.2 |
ID in PlantcircBase | zma_circ_009160 |
Alias | Zm06circ00100, GRMZM2G060726_C1 |
Organism | Zea mays |
Position | chr6: 164802810-164805436 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d038805 |
Parent gene annotation |
Probable transcriptional regulatory protein |
Parent gene strand | - |
Alternative splicing | Zm00001d038805_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d038805_T016:4 Zm00001d038805_T009:4 Zm00001d038805_T019:5 Zm00001d038805_T002:4 Zm00001d038805_T005:4 Zm00001d038805_T007:4 Zm00001d038805_T014:4 Zm00001d038805_T021:4 Zm00001d038805_T023:2 Zm00001d038805_T024:2 Zm00001d038805_T015:4 Zm00001d038805_T013:4 Zm00001d038805_T001:2 Zm00001d038805_T018:2 Zm00001d038805_T020:3 Zm00001d038805_T004:2 Zm00001d038805_T017:4 Zm00001d038805_T003:4 Zm00001d038805_T008:4 Zm00001d038805_T006:5 Zm00001d038805_T012:3 Zm00001d038805_T010:3 Zm00001d038805_T011:3 Zm00001d038805_T022:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.147111452 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
164804831-164802837(+) 164805417-164802812(-) |
Potential amino acid sequence |
MLRSKISLGTSSSLAFSSIADKVVLDEGFGPPFLMAATISFPILLLRFIFFKFWASSIGFRGTS S*(+) MKRNSKIGKEIVAAIKKGGPNPSSNTTLSAILEKARELDVPREILERNIKRASEKGQDTYTEKV YEVYGFGGVGMVVEVLTDKITRSVADIRNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKD QLLTVALDAGADDVLEPNFDDDDSEEEAERFYKIVTTSENYPVLLSKLQEEGLKFETDNGYELV PLNPIEDAQNLKKMKRNSKIGKEIVAAIKKGGPNPSSNTTLSAILEKARELDVPREILERNIKR ASEKGQDTYTEKVYEVYGFGGVGMVVEVLTDKITRSVADIRNVVKDCGAKLADPGSVTFRFRQA RVVNIKVTDADKDQLLTVALDAGADDVLEPNFDDDDSEEEAERFYKIVTTSENYPVLLSKLQEE GLKFETDNGYELVPLNPIEDAQNLKKMKRNSKIGKEIVAAIKKGGPNPSSNTTLSAILEKAREL DVPREILERNIKRASEKGQDTYTEKVYEVYGFGGVGMVVEVLTDKITRSVADIRNVVKDCGAKL ADPGSVTFRFRQARVVNIKVTDADKDQLLTVALDAGADDVLEPNFDDDDSEEEAERFYKIVTTS ENYPVLLSKLQEEGLKFETDNGYELVPLNPIEDAQNLKKMKRNSKIGKEIVAAIKKGGPNPSSN TTLSAILEKARELDVPREILERNIKRASEKGQDTYTEKVYEVYGFGGVGMVVEVLTDKITRSVA DIRNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLTVALDAGADDVLEPNFDDDDSE EEAERFYKIVTTSENYPVLLSKLQEEGLKFETDNGYELVPLNPIE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |