Detail information of Zm00001d038805_circ_g.2


General Information
CircRNA Name Zm00001d038805_circ_g.2
ID in PlantcircBase zma_circ_009160
Alias Zm06circ00100, GRMZM2G060726_C1
Organism Zea mays
Position chr6: 164802810-164805436  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2
Parent gene Zm00001d038805
Parent gene annotation Probable transcriptional regulatory protein
Parent gene strand -
Alternative splicing Zm00001d038805_circ_g.1
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d038805_T016:4
Zm00001d038805_T009:4
Zm00001d038805_T019:5
Zm00001d038805_T002:4
Zm00001d038805_T005:4
Zm00001d038805_T007:4
Zm00001d038805_T014:4
Zm00001d038805_T021:4
Zm00001d038805_T023:2
Zm00001d038805_T024:2
Zm00001d038805_T015:4
Zm00001d038805_T013:4
Zm00001d038805_T001:2
Zm00001d038805_T018:2
Zm00001d038805_T020:3
Zm00001d038805_T004:2
Zm00001d038805_T017:4
Zm00001d038805_T003:4
Zm00001d038805_T008:4
Zm00001d038805_T006:5
Zm00001d038805_T012:3
Zm00001d038805_T010:3
Zm00001d038805_T011:3
Zm00001d038805_T022:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGATAGTGCAAGTTCACAGTGTCCAGCAACACCTACGCCGCAACAATTTCTTTTCCAATTTT
GCTGTTGCGCTTCATCTTCTTCAAGTTCTGGGCATCctcaattgggttcagaggaacaagttcg
tagccattatcagtttcaaacttcaatccttcttcttgaagcttcgatagcaaaactgggtagt
tttctgat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 615
Transcript exons: 164802810-164802930,164803354-164803628,164804778-164804
934,164805375-164805436
CTCAATTGGGTTCAGAGGAACAAGTTCGTAGCCATTATCAGTTTCAAACTTCAATCCTTCTTCT
TGAAGCTTCGATAGCAAAACTGGGTAGTTTTCTGATGTAGTAACTATCTTGTAGAACCTTTCTG
CTTCTTCTTCAGAGTCATCATCATCAAAATTTGGTTCAAGGACGTCATCAGCACCAGCATCTAA
CGCAACGGTGAGCAGTTGGTCCTTATCTGCATCAGTAACTTTTATGTTCACCACTCGAGCTTGT
CTGAATCTAAAGGTAACAGATCCAGGATCAGCCAATTTTGCTCCGCAGTCTTTCACCACGTTTC
TAATGTCAGCAACTGATCTTGTAATTTTGTCAGTTAGAACTTCAACGACCATACCCACTCCACC
AAAACCATAGACCTCATAAACCTTTTCTGTGTAAGTATCTTGTCCCTTTTCTGATGCCCTTTTG
ATGTTGCGCTCCAAAATTTCTCTAGGGACATCAAGTTCCCTTGCTTTCTCTAGTATAGCTGATA
AAGTTGTGTTGGATGAAGGGTTTGGGCCACCCTTCTTGATGGCCGCAACAATTTCTTTTCCAAT
TTTGCTGTTGCGCTTCATCTTCTTCAAGTTCTGGGCATC

Genomic sequence CTCAATTGGGTTCAGAGGAACAAGTTCGTAGCCATTATCAGTTTCAAACTTCAATCCTTCTTCT
TGAAGCTTCGATAGCAAAACTGGGTAGTTTTCTGATGTAGTAACTATCTTGTAGAACCTTAGGA
GAGAAAGAGGCAGCTTTCAGATACAAGGAGAATCCAAAGAAAGTTTTCTTAAATTAAAATGCAG
TAATCAAGAAACTAAAGCACCAGATATGACATAAAATTTGGTATTATCATAGAGCAACCTTAAT
AACCATTATGTTCTGTTCTTGTCAAGCTGACTGATATGGGTTTAGTACTAGGTGTACACCTATT
GTACTAGAGTAGAACTTGTGTATAATCAAGTTTAGTAGCAGCAGCACTCCGGTGTGTGTGTTCG
TGCTCTCTGTTCTCTCTTCTCAACTAATCCAGCTCTCAAGTGTGTGTGTGTGTGTTCGGCTGAG
GATCTGCGCCTGATTGTTGGCTAACACCTTCATTGGTGTTATACTAAATAATGTTGCATCAAAC
AAAAATGCATTCACCATTATACGAGCATGTACCTTTCTGCTTCTTCTTCAGAGTCATCATCATC
AAAATTTGGTTCAAGGACGTCATCAGCACCAGCATCTAACGCAACGGTGAGCAGTTGGTCCTTA
TCTGCATCAGTAACTTTTATGTTCACCACTCGAGCTTGTCTGAATCTAAAGGTAACAGATCCAG
GATCAGCCAATTTTGCTCCGCAGTCTTTCACCACGTTTCTAATGTCAGCAACTGATCTTGTAAT
TTTGTCAGTTAGAACTTCAACGACCATACCCACTCCACCAAAACCATAGACCTGTGAAAAATCT
TCATGTACTTACAACCTATGTAAACCCCATAAAAAGTGTATGTACTCTAAGTAACTCGTACCGG
TTCCAAATTATATTTCACTTTAGCTTCGTACTAACTACCAAGTCAAACTTCTCTAAAAAGGACG
TACCCAGTGCCGTAGACTTCCCGCACTGTGCGGTAGGGATGAAAACGGTCGAAAACGATCGAAA
AAACAGCTAAATTGTTTTTGTTTTCATATTTTTTGGTCGGAACGAAAACGAAAACAAAAACCAA
CGGTCGAAATACGGTTCGGAAGTGTCGGTTATTCGAAAACGATCGAAAACGATAAATTATAGTC
GGAAAGATAATTATTTTGTAGTTTTATCAAAAACATAATAAAGTAATGTATTGCCTAATTTTTA
AGATTTAGAAATACACAAACAAATCTTTTTCATCATTTATATTAGTTAGAGTAATTATAACATT
TGCTTTTCGCGTATTCATTCACTTGAACACAACAAAAGTCTATAACTTAAATAAATTATATGCT
AGATCTATCTTATATTATATAAAACGGTAGAAAAACGGTATTAGCACGACTCGGAAACGAAAAA
TACGAAAACGATCGAAAAACTAGCTAAATCGTTTTCGTACTGTTTCTAATCGGTTCCTGAACAA
TTCGAAAACGATCGGGAAAAAACAGTATTCGAAACGGAACGGTACGGGAATTTCCCGTCCCGTT
TTCATCCCTACTGTGCGGGGTCTGGAGAAGGGTATCTTTAAGCGTCAAGCCTTACCCGCATAGT
ATGCAGAGGATGTGGCTCGAACCCGGGACCTTCCGGTTACAGACGGTAGGCTCTACCGCTGCAC
CAGGCCCACCCTTCAAAGTCAAACTTCTCTAACTTTAACAAAGTTTTTTAGAAAAAAAAAACTA
TTAAAATCTATAAGTTCAAGAAATGCACTATGAATATATTTCACGGAGAATTTAATGAAAGTAA
TTTGATGTTGTAAACACTAGTAAATTTTCTACAAACTTGGTCAGTTTGTACAGAGGGAGTAGCA
TACAAGCCTACTCATATCTGAACCAACCATTTATTCTGAATGCAAACATTAGTATCTTTGCCTT
TGAGATGATTTATCATATATCGTAAAATGAGAATCTACTAAAGTTTACCTCATAAACCTTTTCT
GTGTAAGTATCTTGTCCCTTTTCTGATGCCCTTTTGATGTTGCGCTCCAAAATTTCTCTAGGGA
CATCAAGTTCCCTTGCTTTCTCTAGTATAGCTGATAAAGTTGTGTTGGATGAAGGGTTTGGGCC
ACCCTTCTTGATGCTGTGTGATATCCAGAAACGGACCAGATTAATTAATTTAAATGAATGGCAC
TAGAACTCTGATAGTCTGATGCTTGGTCTTGTTGTCAGTTGCTTTTTTTTCATTTTAACAAGGC
CTACCACTTGGGTAAGATAGTGCCATTCACTTCAGAGATATTAAGCAGGCAATGTCTAATTACT
AAATACAACCGCAATACCTTCACAACATAATAACATGAAACGCTACAGACTGAGAATATATAGA
CACTGTAGCACGGGAACAGATGTCCAATGATTTAAGTTTAAACGGCCAAAAAGGTAAAACATCT
TATGTCAACATATACTAGCAGATGACAGCATGTTGGATTAACCATATGCTCAAAATAATCCAAA
TTATGAAATCAATGAAATACCAAGCTGTTAAAATGATAGTGCAAGTTCACAGTGTCCAGCAACA
CCTACGCCGCAACAATTTCTTTTCCAATTTTGCTGTTGCGCTTCATCTTCTTCAAGTTCTGGGC
ATC
Conservation Information
Conserved circRNAs NA
PMCS 0.147111452
Functional Information
Coding potential Y
Potential coding position 164804831-164802837(+)
164805417-164802812(-)
Potential amino acid sequence MLRSKISLGTSSSLAFSSIADKVVLDEGFGPPFLMAATISFPILLLRFIFFKFWASSIGFRGTS
S*(+)
MKRNSKIGKEIVAAIKKGGPNPSSNTTLSAILEKARELDVPREILERNIKRASEKGQDTYTEKV
YEVYGFGGVGMVVEVLTDKITRSVADIRNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKD
QLLTVALDAGADDVLEPNFDDDDSEEEAERFYKIVTTSENYPVLLSKLQEEGLKFETDNGYELV
PLNPIEDAQNLKKMKRNSKIGKEIVAAIKKGGPNPSSNTTLSAILEKARELDVPREILERNIKR
ASEKGQDTYTEKVYEVYGFGGVGMVVEVLTDKITRSVADIRNVVKDCGAKLADPGSVTFRFRQA
RVVNIKVTDADKDQLLTVALDAGADDVLEPNFDDDDSEEEAERFYKIVTTSENYPVLLSKLQEE
GLKFETDNGYELVPLNPIEDAQNLKKMKRNSKIGKEIVAAIKKGGPNPSSNTTLSAILEKAREL
DVPREILERNIKRASEKGQDTYTEKVYEVYGFGGVGMVVEVLTDKITRSVADIRNVVKDCGAKL
ADPGSVTFRFRQARVVNIKVTDADKDQLLTVALDAGADDVLEPNFDDDDSEEEAERFYKIVTTS
ENYPVLLSKLQEEGLKFETDNGYELVPLNPIEDAQNLKKMKRNSKIGKEIVAAIKKGGPNPSSN
TTLSAILEKARELDVPREILERNIKRASEKGQDTYTEKVYEVYGFGGVGMVVEVLTDKITRSVA
DIRNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLTVALDAGADDVLEPNFDDDDSE
EEAERFYKIVTTSENYPVLLSKLQEEGLKFETDNGYELVPLNPIE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020;Zhang et al., 2019